View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324A_low_336 (Length: 242)
Name: NF11324A_low_336
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_336 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 19 - 242
Target Start/End: Complemental strand, 6916479 - 6916260
Alignment:
| Q |
19 |
caaacatattgttaagagggacatgagctgttatgatagaatcatcttcatcctgatcattgccaacaatcacaccttttctcttgttgaggtcaccagc |
118 |
Q |
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| T |
6916479 |
caaacatattgttaagaggcacatgagctgtaatgacagaataatcttcgtcctgaacattgccaacaatcacaccttttctcttgttgaggtcaccagc |
6916380 |
T |
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| Q |
119 |
aacagctccctgaaattctgttggtactttcagttcaacaagcataacaggttctaatataactggtctggaagctgtgtaacactctctaaaagcatag |
218 |
Q |
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| T |
6916379 |
aacagctccctgaaattctgttggtactttcagttc----agcataacaggttctaatataactggtctggaagctgtgtaacactctctaaaagcatag |
6916284 |
T |
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| Q |
219 |
atagaagccaacttaaaggcaagt |
242 |
Q |
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| T |
6916283 |
atagaagccaacttaaaggcaagt |
6916260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 72; Significance: 7e-33; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 101 - 204
Target Start/End: Original strand, 15037825 - 15037928
Alignment:
| Q |
101 |
cttgttgaggtcaccagcaacagctccctgaaattctgttggtactttcagttcaacaagcataacaggttctaatataactggtctggaagctgtgtaa |
200 |
Q |
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| T |
15037825 |
cttgttgaggtcaccagcaacagctccctgaaattcatttggtacttttagctcaacaagcataacaggctctaatatagttggtctggaagcagtgtaa |
15037924 |
T |
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| Q |
201 |
cact |
204 |
Q |
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| T |
15037925 |
cact |
15037928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 39 - 101
Target Start/End: Original strand, 15037676 - 15037738
Alignment:
| Q |
39 |
acatgagctgttatgatagaatcatcttcatcctgatcattgccaacaatcacaccttttctc |
101 |
Q |
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| T |
15037676 |
acatgagctataatgacagagtcatctccatcctgatcattgccaacaatcataccctttctc |
15037738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 206 - 241
Target Start/End: Original strand, 15038055 - 15038090
Alignment:
| Q |
206 |
tctaaaagcatagatagaagccaacttaaaggcaag |
241 |
Q |
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| T |
15038055 |
tctaaaagcatagatagaagccatcttaaaggcaag |
15038090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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