View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11324A_low_339 (Length: 242)

Name: NF11324A_low_339
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11324A_low_339
NF11324A_low_339
[»] chr1 (15 HSPs)
chr1 (8-242)||(5923948-5924181)
chr1 (116-162)||(25479581-25479627)
chr1 (116-161)||(22810653-22810698)
chr1 (169-218)||(27807210-27807259)
chr1 (118-162)||(28262643-28262687)
chr1 (116-163)||(39803914-39803962)
chr1 (157-220)||(5157155-5157218)
chr1 (119-162)||(37241846-37241889)
chr1 (116-162)||(15558217-15558263)
chr1 (119-157)||(50319273-50319311)
chr1 (116-162)||(51929799-51929845)
chr1 (116-153)||(33527180-33527217)
chr1 (116-161)||(33976686-33976731)
chr1 (157-220)||(15361796-15361857)
chr1 (116-160)||(15515541-15515585)
[»] chr6 (5 HSPs)
chr6 (116-162)||(2117403-2117449)
chr6 (115-162)||(316835-316882)
chr6 (116-162)||(1275149-1275195)
chr6 (164-218)||(13908330-13908384)
chr6 (158-212)||(32171551-32171605)
[»] chr8 (11 HSPs)
chr8 (116-159)||(30627929-30627972)
chr8 (116-162)||(31862493-31862539)
chr8 (123-162)||(8535794-8535833)
chr8 (169-220)||(14926906-14926957)
chr8 (118-161)||(26473777-26473820)
chr8 (115-162)||(30277269-30277316)
chr8 (116-162)||(8060669-8060715)
chr8 (116-162)||(34551120-34551166)
chr8 (184-218)||(43208082-43208116)
chr8 (116-160)||(4558798-4558842)
chr8 (116-160)||(29973081-29973125)
[»] chr5 (11 HSPs)
chr5 (123-162)||(36638754-36638793)
chr5 (116-162)||(37588384-37588430)
chr5 (188-220)||(34205355-34205387)
chr5 (117-160)||(17777910-17777953)
chr5 (116-162)||(15074773-15074819)
chr5 (116-162)||(37526223-37526269)
chr5 (116-161)||(40534199-40534244)
chr5 (116-160)||(15003540-15003584)
chr5 (188-220)||(17369317-17369349)
chr5 (118-162)||(40205098-40205142)
chr5 (157-213)||(40534282-40534338)
[»] chr2 (5 HSPs)
chr2 (169-220)||(43456631-43456682)
chr2 (116-162)||(22681209-22681255)
chr2 (116-161)||(10884546-10884591)
chr2 (121-162)||(24097813-24097854)
chr2 (117-162)||(44438863-44438908)
[»] chr7 (10 HSPs)
chr7 (116-162)||(2825255-2825301)
chr7 (116-160)||(20553103-20553147)
chr7 (127-162)||(8690422-8690457)
chr7 (115-146)||(19624218-19624249)
chr7 (157-220)||(22387820-22387883)
chr7 (116-162)||(24363625-24363671)
chr7 (116-162)||(38010714-38010760)
chr7 (115-161)||(39542325-39542371)
chr7 (164-220)||(22283570-22283625)
chr7 (116-160)||(29363518-29363562)
[»] chr4 (8 HSPs)
chr4 (116-162)||(26747426-26747472)
chr4 (116-161)||(11264301-11264346)
chr4 (116-162)||(7694034-7694080)
chr4 (116-162)||(11158381-11158427)
chr4 (116-162)||(42866068-42866114)
chr4 (155-220)||(19429394-19429459)
chr4 (120-160)||(8468952-8468992)
chr4 (188-220)||(15173227-15173259)
[»] chr3 (9 HSPs)
chr3 (116-162)||(237397-237443)
chr3 (116-162)||(14548745-14548791)
chr3 (118-160)||(30322046-30322088)
chr3 (116-162)||(51510217-51510263)
chr3 (115-162)||(41644469-41644516)
chr3 (116-162)||(22214683-22214729)
chr3 (167-220)||(45541664-45541717)
chr3 (117-161)||(24158528-24158572)
chr3 (167-219)||(31064722-31064774)


Alignment Details
Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 8 - 242
Target Start/End: Original strand, 5923948 - 5924181
Alignment:
Q  8 tactaaacagggcttagataagtttaaataagacaatccaaacatacagnnnnnnnnnttgaaaagtacatagaggaaaatatgtctaacccccttttgt 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||| | ||||    
T  5923948 tactaaacagggcttagataagtttaaataagacaatccaaacatacagaaaaaaaa-ttgaaaagtacatagaggaaaatatgtctaaccccttcttgt 5924046  T
Q  108 aatgagaatataagttgttttcataagttatcctagagatcttatggaaataagcactcctaaacagtcttacaaatgtgtatgtcagtaaataagttca 207  Q
     |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  5924047 gatgaaaatataagttgttttcataagttatcctagagagcttatggaaataagcactcctaaacagtcttacaaatgcgtatgtcagtaaataagttca 5924146  T
Q  208 aataagtcaatcccaattcaaatataccctaatag 242  Q
    |||||||||||||||||||||||||||||||||||    
T  5924147 aataagtcaatcccaattcaaatataccctaatag 5924181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 116 - 162
Target Start/End: Original strand, 25479581 - 25479627
Alignment:
Q  116 tataagttgttttcataagttatcctagagatcttatggaaataagc 162  Q
    ||||||||||||||||||| ||||||||||| |||||| ||||||||    
T  25479581 tataagttgttttcataagctatcctagagagcttatgaaaataagc 25479627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 161
Target Start/End: Complemental strand, 22810698 - 22810653
Alignment:
Q  116 tataagttgttttcataagttatcctagagatcttatggaaataag 161  Q
    |||||||||||||||||||||||| |||||| |||| |||||||||    
T  22810698 tataagttgttttcataagttatcatagagaacttacggaaataag 22810653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 218
Target Start/End: Original strand, 27807210 - 27807259
Alignment:
Q  169 aaacagtcttacaaatgtgtatgtcagtaaataagttcaaataagtcaat 218  Q
    |||||||||||||||||  |||||||||| | ||||||||||||||||||    
T  27807210 aaacagtcttacaaatgcttatgtcagtagaaaagttcaaataagtcaat 27807259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 162
Target Start/End: Complemental strand, 28262687 - 28262643
Alignment:
Q  118 taagttgttttcataagttatcctagagatcttatggaaataagc 162  Q
    |||| |||||||||||||||||||| ||| |||||||||||||||    
T  28262687 taagctgttttcataagttatcctatagaacttatggaaataagc 28262643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 163
Target Start/End: Complemental strand, 39803962 - 39803914
Alignment:
Q  116 tataagttgttttcataa-gttatcctagagatcttatggaaataagca 163  Q
    |||||||||||||||||| | |||||||||||| |||||||||||||||    
T  39803962 tataagttgttttcataatgctatcctagagattttatggaaataagca 39803914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 220
Target Start/End: Original strand, 5157155 - 5157218
Alignment:
Q  157 ataagcactcctaaacagtcttacaaatgtgtatgtcagtaaataagttcaaataagtcaatcc 220  Q
    |||||| |||| ||||||| | |||| ||| |||||| ||| ||||||||||||||||||||||    
T  5157155 ataagctctcccaaacagtttcacaagtgtttatgtccgtagataagttcaaataagtcaatcc 5157218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 162
Target Start/End: Complemental strand, 37241889 - 37241846
Alignment:
Q  119 aagttgttttcataagttatcctagagatcttatggaaataagc 162  Q
    |||||||||||||||| ||||||||||| |||||| ||||||||    
T  37241889 aagttgttttcataagatatcctagagagcttatgaaaataagc 37241846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 162
Target Start/End: Original strand, 15558217 - 15558263
Alignment:
Q  116 tataagttgttttcataagttatcctagagatcttatggaaataagc 162  Q
    |||||| |||||||||||| ||||||||||| ||||| |||||||||    
T  15558217 tataagctgttttcataagatatcctagagaacttatagaaataagc 15558263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 157
Target Start/End: Original strand, 50319273 - 50319311
Alignment:
Q  119 aagttgttttcataagttatcctagagatcttatggaaa 157  Q
    |||||||||||||||| ||||||||||| ||||||||||    
T  50319273 aagttgttttcataagctatcctagagagcttatggaaa 50319311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 162
Target Start/End: Complemental strand, 51929845 - 51929799
Alignment:
Q  116 tataagttgttttcataagttatcctagagatcttatggaaataagc 162  Q
    |||||| |||||||||||| ||| ||||||| |||||||||||||||    
T  51929845 tataagctgttttcataagctattctagagagcttatggaaataagc 51929799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 153
Target Start/End: Complemental strand, 33527217 - 33527180
Alignment:
Q  116 tataagttgttttcataagttatcctagagatcttatg 153  Q
    |||||| ||||||||||||||||||| |||||||||||    
T  33527217 tataagctgttttcataagttatcctcgagatcttatg 33527180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 161
Target Start/End: Original strand, 33976686 - 33976731
Alignment:
Q  116 tataagttgttttcataagttatcctagagatcttatggaaataag 161  Q
    |||||||||||||| |||  ||||||||||| ||||||||||||||    
T  33976686 tataagttgttttcttaacctatcctagagagcttatggaaataag 33976731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 220
Target Start/End: Original strand, 15361796 - 15361857
Alignment:
Q  157 ataagcactcctaaacagtcttacaaatgtgtatgtcagtaaataagttcaaataagtcaatcc 220  Q
    |||||| || ||||||||||  |||||||  |||| ||||||||||||||||||||||| ||||    
T  15361796 ataagctcttctaaacagtc--acaaatgcttatgacagtaaataagttcaaataagtcgatcc 15361857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 160
Target Start/End: Original strand, 15515541 - 15515585
Alignment:
Q  116 tataagttgttttcataagttatcctagagatcttatggaaataa 160  Q
    |||||||||||||||||||||||| | || | |||||||||||||    
T  15515541 tataagttgttttcataagttatcatggatagcttatggaaataa 15515585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 116 - 162
Target Start/End: Original strand, 2117403 - 2117449
Alignment:
Q  116 tataagttgttttcataagttatcctagagatcttatggaaataagc 162  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||||    
T  2117403 tataagttgttttcataagttatcctagagagcttattgaaataagc 2117449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 162
Target Start/End: Complemental strand, 316882 - 316835
Alignment:
Q  115 atataagttgttttcataagttatcctagagatcttatggaaataagc 162  Q
    ||||||||||||||||||||||||||| || ||||| || ||||||||    
T  316882 atataagttgttttcataagttatccttgaaatcttctgcaaataagc 316835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 162
Target Start/End: Original strand, 1275149 - 1275195
Alignment:
Q  116 tataagttgttttcataagttatcctagagatcttatggaaataagc 162  Q
    |||||| |||||||||| |||||||| |||| |||||||||||||||    
T  1275149 tataagctgttttcatatgttatcctggagagcttatggaaataagc 1275195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 218
Target Start/End: Original strand, 13908330 - 13908384
Alignment:
Q  164 ctcctaaacagtcttacaaatgtgtatgtcagtaaataagttcaaataagtcaat 218  Q
    |||||||| ||| | |||| ||| |||||||||| ||||||||||||||||||||    
T  13908330 ctcctaaagagtgtcacaagtgtttatgtcagtagataagttcaaataagtcaat 13908384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 212
Target Start/End: Original strand, 32171551 - 32171605
Alignment:
Q  158 taagcactcctaaacagtcttacaaatgtgtatgtcagtaaataagttcaaataa 212  Q
    ||||| |||| || |||||| |||||||  |||||||||||||||||||||||||    
T  32171551 taagctctcccaaccagtctcacaaatgcttatgtcagtaaataagttcaaataa 32171605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 159
Target Start/End: Complemental strand, 30627972 - 30627929
Alignment:
Q  116 tataagttgttttcataagttatcctagagatcttatggaaata 159  Q
    |||||||||||||||||||||||| |||||| ||||||||||||    
T  30627972 tataagttgttttcataagttatcttagagagcttatggaaata 30627929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 116 - 162
Target Start/End: Original strand, 31862493 - 31862539
Alignment:
Q  116 tataagttgttttcataagttatcctagagatcttatggaaataagc 162  Q
    |||||| |||||||||||||||||||||||| |||||| ||||||||    
T  31862493 tataagatgttttcataagttatcctagagagcttatgaaaataagc 31862539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 162
Target Start/End: Complemental strand, 8535833 - 8535794
Alignment:
Q  123 tgttttcataagttatcctagagatcttatggaaataagc 162  Q
    ||||||||||| |||||||||||| |||||||||||||||    
T  8535833 tgttttcataaattatcctagagagcttatggaaataagc 8535794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 220
Target Start/End: Complemental strand, 14926957 - 14926906
Alignment:
Q  169 aaacagtcttacaaatgtgtatgtcagtaaataagttcaaataagtcaatcc 220  Q
    ||||||||| |||| ||  |||| ||||||||||||||||||||||||||||    
T  14926957 aaacagtctcacaagtgcttatgccagtaaataagttcaaataagtcaatcc 14926906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 161
Target Start/End: Complemental strand, 26473820 - 26473777
Alignment:
Q  118 taagttgttttcataagttatcctagagatcttatggaaataag 161  Q
    ||||||||||||||||| ||||||||||| |||||| |||||||    
T  26473820 taagttgttttcataagctatcctagagagcttatgaaaataag 26473777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 162
Target Start/End: Complemental strand, 30277316 - 30277269
Alignment:
Q  115 atataagttgttttcataagttatcctagagatcttatggaaataagc 162  Q
    ||||||| |||||||||||| |||||||||||  ||||||||||||||    
T  30277316 atataagctgttttcataagctatcctagagagtttatggaaataagc 30277269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 162
Target Start/End: Original strand, 8060669 - 8060715
Alignment:
Q  116 tataagttgttttcataagttatcctagagatcttatggaaataagc 162  Q
    |||||| ||||||||||||  |||||||||| |||||||||||||||    
T  8060669 tataagctgttttcataagcaatcctagagagcttatggaaataagc 8060715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 162
Target Start/End: Original strand, 34551120 - 34551166
Alignment:
Q  116 tataagttgttttcataagttatcctagagatcttatggaaataagc 162  Q
    |||||||||||||| ||||||||||| |||| |||||| ||||||||    
T  34551120 tataagttgttttcttaagttatcctggagagcttatgaaaataagc 34551166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 218
Target Start/End: Complemental strand, 43208116 - 43208082
Alignment:
Q  184 tgtgtatgtcagtaaataagttcaaataagtcaat 218  Q
    |||||||||||||| ||||||||||||||||||||    
T  43208116 tgtgtatgtcagtagataagttcaaataagtcaat 43208082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 160
Target Start/End: Original strand, 4558798 - 4558842
Alignment:
Q  116 tataagttgttttcataagttatcctagagatcttatggaaataa 160  Q
    |||||| ||||| |||||| ||||||||||| |||||||||||||    
T  4558798 tataagctgtttccataagctatcctagagagcttatggaaataa 4558842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 160
Target Start/End: Original strand, 29973081 - 29973125
Alignment:
Q  116 tataagttgttttcataagttatcctagagatcttatggaaataa 160  Q
    ||||||||||||||||||| |||||| ||||  ||||||||||||    
T  29973081 tataagttgttttcataagctatccttgagagtttatggaaataa 29973125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 162
Target Start/End: Original strand, 36638754 - 36638793
Alignment:
Q  123 tgttttcataagttatcctagagatcttatggaaataagc 162  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  36638754 tgttttcataagttatcctagagagcttatggaaataagc 36638793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 116 - 162
Target Start/End: Complemental strand, 37588430 - 37588384
Alignment:
Q  116 tataagttgttttcataagttatcctagagatcttatggaaataagc 162  Q
    ||||||||||||||||||||||| || |||| |||||||||||||||    
T  37588430 tataagttgttttcataagttattctggagagcttatggaaataagc 37588384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 220
Target Start/End: Original strand, 34205355 - 34205387
Alignment:
Q  188 tatgtcagtaaataagttcaaataagtcaatcc 220  Q
    |||||||||||||||||||||||||||||||||    
T  34205355 tatgtcagtaaataagttcaaataagtcaatcc 34205387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 160
Target Start/End: Original strand, 17777910 - 17777953
Alignment:
Q  117 ataagttgttttcataagttatcctagagatcttatggaaataa 160  Q
    ||||||||||||||||||||||||| |||| ||||| |||||||    
T  17777910 ataagttgttttcataagttatcctggagagcttatcgaaataa 17777953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 162
Target Start/End: Complemental strand, 15074819 - 15074773
Alignment:
Q  116 tataagttgttttcataagttatcctagagatcttatggaaataagc 162  Q
    ||||||||||||||||||||||| || || | |||||||||||||||    
T  15074819 tataagttgttttcataagttatactggaaagcttatggaaataagc 15074773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 162
Target Start/End: Complemental strand, 37526269 - 37526223
Alignment:
Q  116 tataagttgttttcataagttatcctagagatcttatggaaataagc 162  Q
    ||||||||||||||||||||| | || |||| |||||||||||||||    
T  37526269 tataagttgttttcataagttgttctggagagcttatggaaataagc 37526223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 161
Target Start/End: Original strand, 40534199 - 40534244
Alignment:
Q  116 tataagttgttttcataagttatcctagagatcttatggaaataag 161  Q
    ||||||||||||||||||| ||||| ||||| ||||||||| ||||    
T  40534199 tataagttgttttcataagctatcccagagagcttatggaagtaag 40534244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 160
Target Start/End: Complemental strand, 15003584 - 15003540
Alignment:
Q  116 tataagttgttttcataagttatcctagagatcttatggaaataa 160  Q
    ||||||| ||||||||||| ||||| ||||| |||||||||||||    
T  15003584 tataagtggttttcataagctatccaagagagcttatggaaataa 15003540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 220
Target Start/End: Original strand, 17369317 - 17369349
Alignment:
Q  188 tatgtcagtaaataagttcaaataagtcaatcc 220  Q
    |||||||||| ||||||||||||||||||||||    
T  17369317 tatgtcagtagataagttcaaataagtcaatcc 17369349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 162
Target Start/End: Complemental strand, 40205142 - 40205098
Alignment:
Q  118 taagttgttttcataagttatcctagagatcttatggaaataagc 162  Q
    ||||||||||||||||| |||||| |||| ||||| |||||||||    
T  40205142 taagttgttttcataagctatcctggagagcttatagaaataagc 40205098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 213
Target Start/End: Original strand, 40534282 - 40534338
Alignment:
Q  157 ataagcactcctaaacagtcttacaaatgtgtatgtcagtaaataagttcaaataag 213  Q
    |||||| |||||||||||| | |||| ||| |||||||||||||||  |||||||||    
T  40534282 ataagctctcctaaacagtatcacaagtgtttatgtcagtaaataaactcaaataag 40534338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 220
Target Start/End: Complemental strand, 43456682 - 43456631
Alignment:
Q  169 aaacagtcttacaaatgtgtatgtcagtaaataagttcaaataagtcaatcc 220  Q
    |||||||||||||| ||| ||||| ||||||||||||||||||||| |||||    
T  43456682 aaacagtcttacaagtgtttatgtgagtaaataagttcaaataagtaaatcc 43456631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 162
Target Start/End: Complemental strand, 22681255 - 22681209
Alignment:
Q  116 tataagttgttttcataagttatcctagagatcttatggaaataagc 162  Q
    |||||| |||||||||||  ||||||||||| |||||||||||||||    
T  22681255 tataagctgttttcataatctatcctagagaacttatggaaataagc 22681209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 161
Target Start/End: Complemental strand, 10884591 - 10884546
Alignment:
Q  116 tataagttgttttcataagttatcctagagatcttatggaaataag 161  Q
    |||||| |||||||||||| ||||||||||| |||||| |||||||    
T  10884591 tataagctgttttcataagctatcctagagagcttatgaaaataag 10884546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 162
Target Start/End: Original strand, 24097813 - 24097854
Alignment:
Q  121 gttgttttcataagttatcctagagatcttatggaaataagc 162  Q
    ||||||||||||||||||||| |||| |||||| ||||||||    
T  24097813 gttgttttcataagttatcctggagagcttatgaaaataagc 24097854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 162
Target Start/End: Complemental strand, 44438908 - 44438863
Alignment:
Q  117 ataagttgttttcataagttatcctagagatcttatggaaataagc 162  Q
    ||||| ||| ||||||||||||||| |||||||| |||||||||||    
T  44438908 ataagctgtcttcataagttatcctggagatcttgtggaaataagc 44438863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 116 - 162
Target Start/End: Complemental strand, 2825301 - 2825255
Alignment:
Q  116 tataagttgttttcataagttatcctagagatcttatggaaataagc 162  Q
    ||||||||||||||| ||| ||||||||||| |||||||||||||||    
T  2825301 tataagttgttttcacaagctatcctagagaacttatggaaataagc 2825255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 160
Target Start/End: Original strand, 20553103 - 20553147
Alignment:
Q  116 tataagttgttttcataagttatcctagagatcttatggaaataa 160  Q
    ||||||||||||||| |||||||||||| || |||||||||||||    
T  20553103 tataagttgttttcacaagttatcctagtgagcttatggaaataa 20553147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 162
Target Start/End: Complemental strand, 8690457 - 8690422
Alignment:
Q  127 ttcataagttatcctagagatcttatggaaataagc 162  Q
    |||||||||||||||||||| |||||||||||||||    
T  8690457 ttcataagttatcctagagaacttatggaaataagc 8690422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 146
Target Start/End: Original strand, 19624218 - 19624249
Alignment:
Q  115 atataagttgttttcataagttatcctagaga 146  Q
    ||||||||||||||||||||||||||||||||    
T  19624218 atataagttgttttcataagttatcctagaga 19624249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 220
Target Start/End: Complemental strand, 22387883 - 22387820
Alignment:
Q  157 ataagcactcctaaacagtcttacaaatgtgtatgtcagtaaataagttcaaataagtcaatcc 220  Q
    |||||| |||| ||||||||| |||  ||| ||||||||||||||||||| | |||||||||||    
T  22387883 ataagctctcccaaacagtctcacacgtgtttatgtcagtaaataagttctagtaagtcaatcc 22387820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 162
Target Start/End: Complemental strand, 24363671 - 24363625
Alignment:
Q  116 tataagttgttttcataagttatcctagagatcttatggaaataagc 162  Q
    ||||||||||||||||||| |||||| ||||  ||||||||||||||    
T  24363671 tataagttgttttcataagctatcctggagaggttatggaaataagc 24363625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 162
Target Start/End: Original strand, 38010714 - 38010760
Alignment:
Q  116 tataagttgttttcataagttatcctagagatcttatggaaataagc 162  Q
    |||||| |||||||||||  ||||||||||| |||||||||||||||    
T  38010714 tataagctgttttcataatctatcctagagaacttatggaaataagc 38010760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 161
Target Start/End: Complemental strand, 39542371 - 39542325
Alignment:
Q  115 atataagttgttttcataagttatcctagagatcttatggaaataag 161  Q
    ||||||||||||| ||||||||||||| |||| |||||| |||||||    
T  39542371 atataagttgtttccataagttatcctggagagcttatgaaaataag 39542325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 220
Target Start/End: Complemental strand, 22283625 - 22283570
Alignment:
Q  164 ctcctaaacagtcttacaaatgtgtatgtcagtaaataagttcaaataagtcaatcc 220  Q
    |||||||||||||| |||||  | |||| ||||| ||||||||||||||||||||||    
T  22283625 ctcctaaacagtctcacaaaatt-tatgacagtagataagttcaaataagtcaatcc 22283570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 160
Target Start/End: Original strand, 29363518 - 29363562
Alignment:
Q  116 tataagttgttttcataagttatcctagagatcttatggaaataa 160  Q
    |||||| |||| |||||||||||||| |||| |||||||||||||    
T  29363518 tataagctgttatcataagttatcctggagagcttatggaaataa 29363562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 116 - 162
Target Start/End: Complemental strand, 26747472 - 26747426
Alignment:
Q  116 tataagttgttttcataagttatcctagagatcttatggaaataagc 162  Q
    |||||||||||||||| |||||||||| ||| |||||||||||||||    
T  26747472 tataagttgttttcattagttatcctaaagaacttatggaaataagc 26747426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 161
Target Start/End: Original strand, 11264301 - 11264346
Alignment:
Q  116 tataagttgttttcataagttatcctagagatcttatggaaataag 161  Q
    |||||||||||||||||||  |||||||||| ||||||||||||||    
T  11264301 tataagttgttttcataagccatcctagagagcttatggaaataag 11264346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 162
Target Start/End: Complemental strand, 7694080 - 7694034
Alignment:
Q  116 tataagttgttttcataagttatcctagagatcttatggaaataagc 162  Q
    |||||| ||||||||||||||||||| ||||  ||||||||||||||    
T  7694080 tataagctgttttcataagttatcctggagagtttatggaaataagc 7694034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 162
Target Start/End: Complemental strand, 11158427 - 11158381
Alignment:
Q  116 tataagttgttttcataagttatcctagagatcttatggaaataagc 162  Q
    ||||||||||||||||||| |||| |||||| ||| |||||||||||    
T  11158427 tataagttgttttcataagctatcttagagagcttgtggaaataagc 11158381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 162
Target Start/End: Original strand, 42866068 - 42866114
Alignment:
Q  116 tataagttgttttcataagttatcctagagatcttatggaaataagc 162  Q
    ||||||||||||||||||| |||||| |||| ||||||||| |||||    
T  42866068 tataagttgttttcataagctatccttgagagcttatggaagtaagc 42866114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 220
Target Start/End: Complemental strand, 19429459 - 19429394
Alignment:
Q  155 aaataagcactcctaaacagtcttacaaatgtgtatgtcagtaaataagttcaaataagtcaatcc 220  Q
    |||||||| |||| ||||||||| |||| ||| |||  ||||||||||| ||||||||| ||||||    
T  19429459 aaataagctctcccaaacagtctcacaagtgtttataccagtaaataagctcaaataagccaatcc 19429394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 160
Target Start/End: Original strand, 8468952 - 8468992
Alignment:
Q  120 agttgttttcataagttatcctagagatcttatggaaataa 160  Q
    ||||||||||||||||||| ||||||| |||||| ||||||    
T  8468952 agttgttttcataagttattctagagagcttatgaaaataa 8468992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 220
Target Start/End: Complemental strand, 15173259 - 15173227
Alignment:
Q  188 tatgtcagtaaataagttcaaataagtcaatcc 220  Q
    |||||||||| ||||||||||||||||||||||    
T  15173259 tatgtcagtagataagttcaaataagtcaatcc 15173227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 116 - 162
Target Start/End: Original strand, 237397 - 237443
Alignment:
Q  116 tataagttgttttcataagttatcctagagatcttatggaaataagc 162  Q
    ||||||||||||||||||||||||||| ||| |||| ||||||||||    
T  237397 tataagttgttttcataagttatcctatagagcttacggaaataagc 237443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 116 - 162
Target Start/End: Complemental strand, 14548791 - 14548745
Alignment:
Q  116 tataagttgttttcataagttatcctagagatcttatggaaataagc 162  Q
    ||||||||||||||||||||||| || |||| |||||||||||||||    
T  14548791 tataagttgttttcataagttattctggagagcttatggaaataagc 14548745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 118 - 160
Target Start/End: Complemental strand, 30322088 - 30322046
Alignment:
Q  118 taagttgttttcataagttatcctagagatcttatggaaataa 160  Q
    ||||||||||||||||||||||||| ||| |||||||||||||    
T  30322088 taagttgttttcataagttatcctaaagagcttatggaaataa 30322046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 116 - 162
Target Start/End: Complemental strand, 51510263 - 51510217
Alignment:
Q  116 tataagttgttttcataagttatcctagagatcttatggaaataagc 162  Q
    |||||||||||||||||||||||| | |||| |||||||||||||||    
T  51510263 tataagttgttttcataagttatcgtggagagcttatggaaataagc 51510217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 162
Target Start/End: Complemental strand, 41644516 - 41644469
Alignment:
Q  115 atataagttgttttcataagttatcctagagatcttatggaaataagc 162  Q
    ||||||| |||||||||||| |||| ||||||||||| ||||||||||    
T  41644516 atataagctgttttcataagctatcgtagagatcttaaggaaataagc 41644469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 162
Target Start/End: Complemental strand, 22214729 - 22214683
Alignment:
Q  116 tataagttgttttcataagttatcctagagatcttatggaaataagc 162  Q
    ||||||||||||||||||| |||||||||||  ||| ||||||||||    
T  22214729 tataagttgttttcataagctatcctagagacattacggaaataagc 22214683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 220
Target Start/End: Original strand, 45541664 - 45541717
Alignment:
Q  167 ctaaacagtcttacaaatgtgtatgtcagtaaataagttcaaataagtcaatcc 220  Q
    |||||||||||||||| ||| |||  || |||||||| ||||||||||||||||    
T  45541664 ctaaacagtcttacaagtgtttataccattaaataagctcaaataagtcaatcc 45541717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 161
Target Start/End: Complemental strand, 24158572 - 24158528
Alignment:
Q  117 ataagttgttttcataagttatcctagagatcttatggaaataag 161  Q
    ||||| |||||||||||| |||||| |||| ||||||||||||||    
T  24158572 ataagctgttttcataagctatcctggagagcttatggaaataag 24158528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 31064722 - 31064774
Alignment:
Q  167 ctaaacagtcttacaaatgtgtatgtcagtaaataagttcaaataagtcaatc 219  Q
    ||||||| |||||||| | | ||||||||| | ||||||||||||||||||||    
T  31064722 ctaaacaatcttacaagtctttatgtcagttattaagttcaaataagtcaatc 31064774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University