View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324A_low_345 (Length: 240)
Name: NF11324A_low_345
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_345 |
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Alignment Details
Target: chr5 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 23 - 188
Target Start/End: Original strand, 35818743 - 35818908
Alignment:
| Q |
23 |
aggagtatgaaagttgaaacattctattctagctactacaattagccgtttaaggcttcaaggagtcataaatgtagtgctcaattttcttgaaacgaca |
122 |
Q |
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| T |
35818743 |
aggagtatgaaagttgaaacattctattctagctactacaattagccgtttaaggcttcaaggagtcataaatgtagtgctcaattttcttgaaacgaca |
35818842 |
T |
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| Q |
123 |
aatcaataaaatgaaatctagttgctggactatacatacatatatcatcacaagccaagttgcttt |
188 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
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| T |
35818843 |
aatcaataaaatgaaatctagttgctggactatacacacatatatcatcaaaagccaagttgcttt |
35818908 |
T |
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