View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11324A_low_348 (Length: 240)
Name: NF11324A_low_348
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_348 |
 | |
|
| [»] scaffold0305 (1 HSPs) |
| |
|
Alignment Details
Target: scaffold0305 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: scaffold0305
Description:
Target: scaffold0305; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 21 - 240
Target Start/End: Original strand, 19279 - 19505
Alignment:
| Q |
21 |
tacctttactttttctggaattcgaagtctccaaattttcattcaattatcttccattctcagctcactattatcaaccaaactttccatggtacagtga |
120 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
19279 |
tacctttactttttctggaatttgaagtctccaaattttcattcagttaccttccactctcagctcactattatcaaccaaactttccatggtatagtga |
19378 |
T |
|
| Q |
121 |
tatgcagatt-----gtgtagttcccatgggttgtaaatttccaacattgtttatcttctcccatctcatccataattggcatgg--agtatattctaga |
213 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| | |
|
|
| T |
19379 |
tatgcagatttaaccgtgtagttcccatgggttgtaaatttccaacattgtttatcttctcccatctcatccataattggcatggaaaatatattcttgg |
19478 |
T |
|
| Q |
214 |
cacttctctcattgaaaacctccttga |
240 |
Q |
| |
|
||| ||||||||||||||||||||||| |
|
|
| T |
19479 |
cacctctctcattgaaaacctccttga |
19505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 45 - 200
Target Start/End: Complemental strand, 18055377 - 18055218
Alignment:
| Q |
45 |
aagtctccaaattttcattcaattatcttccattctcagctcactattatcaaccaaactttccatggtacagtgatatgcagat-----tgtgtagttc |
139 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||| || ||||| || ||||||| |||||| |||||| |||||||||| ||| ||||||| |
|
|
| T |
18055377 |
aagtctccaaattttcattcaattaccttccactcttagttcactgttgtcaaccagactttctatggtagagtgatatgccgatctaaccgtgtagtct |
18055278 |
T |
|
| Q |
140 |
ccatgggttgtaaatttccaacattgtttatcttctcccatctcatccataattggcatgg |
200 |
Q |
| |
|
||| | |||||||| ||||||||| ||||||||||| ||||||||||||| |||| ||||| |
|
|
| T |
18055277 |
ccacgtgttgtaaa-ttccaacatcgtttatcttcttccatctcatccatgattgacatgg |
18055218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 21 - 200
Target Start/End: Complemental strand, 36009604 - 36009417
Alignment:
| Q |
21 |
tacctttactttttctggaattcgaagtctccaaattttcattcaattatcttccattctcagctcactattatcaaccaaac---tttccatggtacag |
117 |
Q |
| |
|
||||||||||| || |||||||||||| | ||||||||||| | ||| |||||| |||||| ||||| ||||| |||| || ||||||||||| || |
|
|
| T |
36009604 |
tacctttacttattgaggaattcgaagttttcaaattttcatctagttaccttccactctcagatcactcttatccaccagactaatttccatggtatag |
36009505 |
T |
|
| Q |
118 |
tgatatgcagatt-----gtgtagttcccatgggttgtaaatttccaacattgtttatcttctcccatctcatccataattggcatgg |
200 |
Q |
| |
|
||||| || |||| ||||||| |||||| | |||| | || | |||||||||||| ||| |||||||||| |||||||||||| |
|
|
| T |
36009504 |
tgataagccgatttaatcgtgtagtctccatggatagtaattatctagcattgtttatctactctcatctcatccgtaattggcatgg |
36009417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 125
Target Start/End: Complemental strand, 14344847 - 14344743
Alignment:
| Q |
21 |
tacctttactttttctggaattcgaagtctccaaattttcattcaattatcttccattctcagctcactattatcaaccaaactttccatggtacagtga |
120 |
Q |
| |
|
|||||||||| ||| |||||||||| |||||||||||||||| | ||| |||||| |||| |||||| |||||||||| | ||||| ||||| ||| | |
|
|
| T |
14344847 |
tacctttactatttatggaattcgatgtctccaaattttcatcaagttaccttccactctccactcactgttatcaaccagagtttccgtggtatagtca |
14344748 |
T |
|
| Q |
121 |
tatgc |
125 |
Q |
| |
|
||||| |
|
|
| T |
14344747 |
tatgc |
14344743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 200
Target Start/End: Complemental strand, 10149786 - 10149731
Alignment:
| Q |
145 |
ggttgtaaatttccaacattgtttatcttctcccatctcatccataattggcatgg |
200 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||| |||||||||||||||| ||||| |
|
|
| T |
10149786 |
ggttgtaaatttccaacaccgttcatcttctcctatctcatccataattgacatgg |
10149731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University