View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324A_low_35 (Length: 424)
Name: NF11324A_low_35
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 389; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 7 - 418
Target Start/End: Complemental strand, 33499377 - 33498965
Alignment:
| Q |
7 |
cagtttacaatattggaaaagcaaacacaaaaagcaaataatttaactagtttaaacaccataaaatgtctcataggaccatcaaagatggccaattcta |
106 |
Q |
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| T |
33499377 |
cagtttacaatattagaaaagcaaacacaaaaagcaaataatttaactagtttaaacaccataaaatgtctcataggaccatcaaagatggccaattcta |
33499278 |
T |
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| Q |
107 |
actgtttccgatagga-ggaaaataaaattcatacggaatgaaaagacaagttttatgatcaaaattttaagcgatcctcgtcataatttctaaagctgc |
205 |
Q |
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| T |
33499277 |
actgtttccgatcggaaggaaaataaaattcatacggaatgaaaagacaagttttatgatcaaaattttaagcgatcctcgtcataatttctaaagctgc |
33499178 |
T |
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| Q |
206 |
ttgcttgtaagtttcctccatcgagtttgcgccaagtgaagcttgttttgcctgcaaaatcaacacaattcaattgagctattcgcactcacactactca |
305 |
Q |
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| T |
33499177 |
ttgcttgtaagtttcctccatcgagtttgcgccaagtgaagcttgttttgcctgcaaaatcaacacaattcaattgagctattcgctctcacactactca |
33499078 |
T |
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| Q |
306 |
agagaagagaaggtttgaaacttacatgggccataatcatgtagaagtttccatttgcattgcacataatgttggcagaaataacatcaatcttatgttt |
405 |
Q |
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| T |
33499077 |
agagaagagaaggtttgaaacttacatgggccataatcatgtagaagtttccatttgcattgcacataatgttggcagaaataacatcaatcttatgttt |
33498978 |
T |
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| Q |
406 |
ctctaacaccaaa |
418 |
Q |
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| T |
33498977 |
ctccaacaccaaa |
33498965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 305 - 418
Target Start/End: Complemental strand, 33485867 - 33485754
Alignment:
| Q |
305 |
aagagaagagaaggtttgaaacttacatgggccataatcatgtagaagtttccatttgcattgcacataatgttggcagaaataacatcaatcttatgtt |
404 |
Q |
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| T |
33485867 |
aagaggagagaaggtttgaaacttacatgggccataatcatgtagaagtttccatttgcattgcacataatgttggcagaaataacatcaatcttatgtt |
33485768 |
T |
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| Q |
405 |
tctctaacaccaaa |
418 |
Q |
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|||| ||||||||| |
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| T |
33485767 |
tctccaacaccaaa |
33485754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 154 - 308
Target Start/End: Complemental strand, 33486212 - 33486058
Alignment:
| Q |
154 |
aagttttatgatcaaaattttaagcgatcctcgtcataatttctaaagctgcttgcttgtaagtttcctccatcgagtttgcgccaagtgaagcttgttt |
253 |
Q |
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| T |
33486212 |
aagttttatgatcaaaattctaagcgatccacatcataatttctccagccgcatgcttgtatgtttccttcattgaatttgcgtcatgtgaagcttgttt |
33486113 |
T |
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| Q |
254 |
tgcctgcaaaatcaacacaattcaattgagctattcgcactcacactactcaaga |
308 |
Q |
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| T |
33486112 |
tgcctgcaaaattaagacaattcaattgagctattcacactcgtactactcaaga |
33486058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 21 - 93
Target Start/End: Complemental strand, 33486284 - 33486210
Alignment:
| Q |
21 |
ggaaaagcaaacacaaaaagcaaataatt-taactagtttaaacaccat-aaaatgtctcataggaccatcaaag |
93 |
Q |
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|||||||||||||||||||||| |||||| |||||||||||||||||| ||||| ||| |||||||||||||| |
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| T |
33486284 |
ggaaaagcaaacacaaaaagcatataattaaaactagtttaaacaccataaaaattgctcttaggaccatcaaag |
33486210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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