View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11324A_low_355 (Length: 237)
Name: NF11324A_low_355
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_355 |
 | |
|
| [»] chr4 (4 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 72; Significance: 7e-33; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 122 - 237
Target Start/End: Original strand, 37321286 - 37321403
Alignment:
| Q |
122 |
attaaacaagaactgtcatcaaagaatgatgatgatgat---atatcaatagaaattaannnnnnncccccagggagattaggctcaaacacaagacaaa |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
37321286 |
attaaacaagaactgtcatcaaagaatgatgatgatgatgatatatcaatacaaattaatttttttcccc-agggagattaggctcaaacacaagacaaa |
37321384 |
T |
|
| Q |
219 |
caggggaaattctgatcaa |
237 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
37321385 |
caggggaaattctgatcaa |
37321403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 71
Target Start/End: Original strand, 37321203 - 37321270
Alignment:
| Q |
4 |
aacagagaacaaccatctattttgaagaaaaaatgtaacaannnnnnnnattgattctaccatctatt |
71 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
37321203 |
aacagagaacaaccatctattttgaagaaaaaatgtaacaattttttctattgattctaccatctatt |
37321270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 189 - 237
Target Start/End: Original strand, 37330276 - 37330324
Alignment:
| Q |
189 |
cagggagattaggctcaaacacaagacaaacaggggaaattctgatcaa |
237 |
Q |
| |
|
||||||||||| |||||||||||||||||| |||||||||||||||||| |
|
|
| T |
37330276 |
cagggagattaagctcaaacacaagacaaataggggaaattctgatcaa |
37330324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 237
Target Start/End: Complemental strand, 37347482 - 37347434
Alignment:
| Q |
189 |
cagggagattaggctcaaacacaagacaaacaggggaaattctgatcaa |
237 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||||||| ||| ||||||| |
|
|
| T |
37347482 |
cagggagattaggttcaaacacaagacaatcaggggatattttgatcaa |
37347434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University