View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324A_low_359 (Length: 237)
Name: NF11324A_low_359
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_359 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 10 - 237
Target Start/End: Original strand, 14536117 - 14536344
Alignment:
| Q |
10 |
ggacatcattttatcttcagttgttctatattgatcttatctagtttatattctgtgttagactgttagtcatgcctcatgccctcttttgttgtcttgc |
109 |
Q |
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| T |
14536117 |
ggacatcattttatcttcagttgttctatattgatcttatctagtttatattctgtggtagactgttagtcatgcctcatgccctcttttgttgtcttgc |
14536216 |
T |
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| Q |
110 |
taatattaaaacctattcatttattttttatgtctgaaattcttagtcgagtttataaacttgttctcatttatatttcaagctataatctttatccatc |
209 |
Q |
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| T |
14536217 |
taatattaaaacctattcatttattttttatgtctgaaattcttagtcgagtttataaactagttctcatttatatttcaagctataatttttatccatc |
14536316 |
T |
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| Q |
210 |
tgttgcagtcaccattgctgatttttaa |
237 |
Q |
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| T |
14536317 |
tgttgcagtcaccattgctgatttttaa |
14536344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 33 - 235
Target Start/End: Original strand, 14531223 - 14531430
Alignment:
| Q |
33 |
ttctatattgatcttatctagtttatattctgtgttagactgttagtcatgcctcatgccctcttttgttgtcttgctaatattaaaacctat---tcat |
129 |
Q |
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| T |
14531223 |
ttctatattattcttatcttgtttatagtttgtgttagactgttagtcatgccctatgccctcttttgttgtcttactaatcttaaaatctatgattcat |
14531322 |
T |
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| Q |
130 |
ttattttttatgtctgaaattcttagtcgagtttataaacttgttctcatttatatttcaagctataatctttatcca--tctgttgcagtcaccattgc |
227 |
Q |
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| T |
14531323 |
ttgttttttacgactgaaattcttagtcgagtttataaacttgttctcacttatatttcaagctataatctttatccacggccgttgcagtcgccattgc |
14531422 |
T |
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| Q |
228 |
tgattttt |
235 |
Q |
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| T |
14531423 |
tgattttt |
14531430 |
T |
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