View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324A_low_36 (Length: 424)
Name: NF11324A_low_36
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_36 |
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Alignment Details
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 128 - 416
Target Start/End: Complemental strand, 33878686 - 33878404
Alignment:
| Q |
128 |
acattgggtaccatttattggttgtctttatatttgaattttaaacttatggagagaaagatttagaggataacacatatatatgttcattagaggataa |
227 |
Q |
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| T |
33878686 |
acattgggtgccatttattggttgtctttatatttgaattttaaacttatggagagaaagatttagaggataacacat------gtttattagaggataa |
33878593 |
T |
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| Q |
228 |
gcttagtgaggattcaagacttggccttcattaagagtactccaagaggataaaagtattggtaataagagggtgagctaccaaagattgacaaattggt |
327 |
Q |
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| T |
33878592 |
gcttagtgaggattcaagacttggccttcattaagagtactccaagaggataaaagtattggtaataagagggtgagctaccaaagattgacaaattggt |
33878493 |
T |
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| Q |
328 |
cttgtataatcttgcatcagaggttgagtccaaattatcgtttatacgtggtatagtagacaaacgatgcttaataaaatttatattgt |
416 |
Q |
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| T |
33878492 |
cttgtatgatcttgcataagaggttgagtccaaattatcgtttatacgtggtatagtagacaaacgatgcttaataaaatttatcttgt |
33878404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 5 - 78
Target Start/End: Complemental strand, 33879022 - 33878949
Alignment:
| Q |
5 |
caagtgtttgatctttcaatggaaagtgtatagaatatgcattacttgtgaatttcttcttcctctctctaaca |
78 |
Q |
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| T |
33879022 |
caagtgtttgatctttcaatggaaagtgtatagaatatgcattacttgtgaatttcttcttcctctctctaaca |
33878949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 235 - 310
Target Start/End: Original strand, 45960847 - 45960922
Alignment:
| Q |
235 |
gaggattcaagacttggccttcattaagagtactccaagaggataaaagtattggtaataagagggtgagctacca |
310 |
Q |
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| T |
45960847 |
gaggattcaagacttggccttcattaagattacttcaagtggataaaagtattggtcataagagggtgagctacca |
45960922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 33878853 - 33878803
Alignment:
| Q |
78 |
agtcaaataggatcgaaccgttatggagtatattccttgaaataataggca |
128 |
Q |
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| T |
33878853 |
agtcaaataggatcgaaccgttatggagtatattccttgaaataataggca |
33878803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 160 - 202
Target Start/End: Original strand, 45960791 - 45960833
Alignment:
| Q |
160 |
tttgaattttaaacttatggagagaaagatttagaggataaca |
202 |
Q |
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| T |
45960791 |
tttgaattttgaacttatggagagaaagctttagaggataaca |
45960833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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