View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324A_low_361 (Length: 236)
Name: NF11324A_low_361
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_361 |
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Alignment Details
Target: chr4 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 26 - 216
Target Start/End: Original strand, 1831654 - 1831845
Alignment:
| Q |
26 |
gatttgggaaagttaaaatatttccttgggatggaattcactaaaacttcataatgtttagtggtgcaccagaagaaatatgctacaaatattttaaaga |
125 |
Q |
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| T |
1831654 |
gatttgggaaagttaacatatttccctggaatggaattcactaaaacttcagaatgtttagtgatgcaccagaagaaatatgctacaaatattttaaaga |
1831753 |
T |
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| Q |
126 |
gattcaacatgatgggcttcaatcctgcatctacaccatctgaagtg-accttaggtgtgtaaagaatgaagataaggagctagttgaccct |
216 |
Q |
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| T |
1831754 |
gattcaacatgatgggcttcaatcctgcatctacaccatctgaagtgaatcttaagcttgtaaagaatgaagatgaagagctagttgaccct |
1831845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 32 - 161
Target Start/End: Original strand, 30065210 - 30065339
Alignment:
| Q |
32 |
ggaaagttaaaatatttccttgggatggaattcactaaaacttcataatgtttagtggtgcaccagaagaaatatgctacaaatattttaaagagattca |
131 |
Q |
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| T |
30065210 |
ggaaagttaacatacttccttggtatggaattcactaaaacttctgaaggtctagttaagcatcagaagaagtatgcttctgatattctcaagaggttca |
30065309 |
T |
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| Q |
132 |
acatgatgggcttcaatcctgcatctacac |
161 |
Q |
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| T |
30065310 |
acatgttgaactgcaatcctgcatctacac |
30065339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 132
Target Start/End: Original strand, 9816969 - 9817073
Alignment:
| Q |
28 |
tttgggaaagttaaaatatttccttgggatggaattcactaaaacttcataatgtttagtggtgcaccagaagaaatatgctacaaatattttaaagaga |
127 |
Q |
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|||||||| ||||| ||||||| |||| || |||||||||||||| ||| | | |||||| ||||| ||||||||||||| | | ||||||| |||||| |
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| T |
9816969 |
tttgggaaggttaacatatttctttggaatagaattcactaaaacctcaaagggattagtgatgcactagaagaaatatgcaatagatattttgaagaga |
9817068 |
T |
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| Q |
128 |
ttcaa |
132 |
Q |
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||||| |
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| T |
9817069 |
ttcaa |
9817073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 104
Target Start/End: Complemental strand, 16944186 - 16944109
Alignment:
| Q |
27 |
atttgggaaagttaaaatatttccttgggatggaattcactaaaacttcataatgtttagtggtgcaccagaagaaat |
104 |
Q |
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|||||||||||||| ||| |||||||| || ||||||||| |||| ||| | | |||||| ||||||||||||||| |
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| T |
16944186 |
atttgggaaagttaccatacttccttggaatagaattcactgaaacctcaaagggattagtgatgcaccagaagaaat |
16944109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 104
Target Start/End: Complemental strand, 17014851 - 17014774
Alignment:
| Q |
27 |
atttgggaaagttaaaatatttccttgggatggaattcactaaaacttcataatgtttagtggtgcaccagaagaaat |
104 |
Q |
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|||||||||||||| ||| |||||||| || ||||||||| |||| ||| | | |||||| ||||||||||||||| |
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| T |
17014851 |
atttgggaaagttaccatacttccttggaatagaattcactgaaacctcaaagggattagtgatgcaccagaagaaat |
17014774 |
T |
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