View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324A_low_362 (Length: 236)
Name: NF11324A_low_362
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_362 |
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Alignment Details
Target: chr4 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 16 - 217
Target Start/End: Complemental strand, 18005006 - 18004805
Alignment:
| Q |
16 |
cagggagtgtagggattggtagtggaggagctggtaatggaaagagtggtaattgattcttttctacttgtgtcttttcaatgttataattcttgcttgg |
115 |
Q |
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| T |
18005006 |
cagggagtgtagggattggtagtggaggagctggtaatggaaagggtggtaactgattcttatctacttgtgtcttttcaatgttataattcttgcttgg |
18004907 |
T |
|
| Q |
116 |
attaacttgatcttctacctttcctccaccaataacttctttctccttaattggaatattcttgagttgtctagcaccacttatggtaacaaggttgttc |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||| || |
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| T |
18004906 |
attaacttgatcttctacctttcctccaccaataacttctttctccttaattggaatattcttgaattgtctagaaccacttatggtaacaaagttggtc |
18004807 |
T |
|
| Q |
216 |
at |
217 |
Q |
| |
|
|| |
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|
| T |
18004806 |
at |
18004805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 16 - 217
Target Start/End: Complemental strand, 20644545 - 20644344
Alignment:
| Q |
16 |
cagggagtgtagggattggtagtggaggagctggtaatggaaagagtggtaattgattcttttctacttgtgtcttttcaatgttataattcttgcttgg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
20644545 |
cagggagtgtagggattggtagtggaggagctggtaatggaaagggtggtaactgattcttatctacttgtgtcttttcaatgttataattcttgcttgg |
20644446 |
T |
|
| Q |
116 |
attaacttgatcttctacctttcctccaccaataacttctttctccttaattggaatattcttgagttgtctagcaccacttatggtaacaaggttgttc |
215 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||| || |
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| T |
20644445 |
attaacttgatcttctacctttcctccaccaataacttctttctccttaattggaatattcttgaattgtctagaaccacttatggtaacaaagttggtc |
20644346 |
T |
|
| Q |
216 |
at |
217 |
Q |
| |
|
|| |
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|
| T |
20644345 |
at |
20644344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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