View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11324A_low_363 (Length: 235)

Name: NF11324A_low_363
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11324A_low_363
NF11324A_low_363
[»] chr3 (21 HSPs)
chr3 (40-122)||(19849354-19849436)
chr3 (47-120)||(20015886-20015959)
chr3 (47-120)||(19858429-19858502)
chr3 (141-212)||(19848795-19848866)
chr3 (52-120)||(20046480-20046548)
chr3 (69-120)||(17115073-17115124)
chr3 (51-116)||(24839666-24839731)
chr3 (48-120)||(19818920-19818992)
chr3 (40-116)||(19944078-19944154)
chr3 (41-125)||(19956439-19956523)
chr3 (141-209)||(20036845-20036913)
chr3 (144-212)||(26646818-26646886)
chr3 (136-215)||(20005219-20005298)
chr3 (41-120)||(20036282-20036361)
chr3 (54-114)||(19832235-19832295)
chr3 (157-209)||(19838195-19838247)
chr3 (157-209)||(19955886-19955938)
chr3 (144-215)||(19818362-19818433)
chr3 (157-215)||(19812085-19812143)
chr3 (157-210)||(26651843-26651896)
chr3 (157-209)||(19950935-19950987)
[»] chr5 (2 HSPs)
chr5 (40-120)||(9815394-9815474)
chr5 (40-120)||(26354605-26354685)
[»] chr8 (1 HSPs)
chr8 (128-166)||(22685874-22685912)
[»] chr7 (5 HSPs)
chr7 (69-118)||(12497567-12497616)
chr7 (69-118)||(12521432-12521481)
chr7 (52-120)||(12579781-12579849)
chr7 (52-119)||(12519486-12519553)
chr7 (70-120)||(12495703-12495753)
[»] chr4 (3 HSPs)
chr4 (63-120)||(6397440-6397497)
chr4 (163-203)||(6397999-6398039)
chr4 (163-203)||(6398078-6398118)
[»] chr1 (1 HSPs)
chr1 (154-209)||(1717025-1717080)


Alignment Details
Target: chr3 (Bit Score: 67; Significance: 7e-30; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 40 - 122
Target Start/End: Complemental strand, 19849436 - 19849354
Alignment:
Q  40 atcattcatagctgagtctaagaccaacctaacattgtcaattttcaaggcctgaaccttatgccatctaaacaataaaggat 122  Q
    ||||| |||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19849436 atcatccatagccgagtctaatgccaacctaacattgtcaattttcaaggcctgaaccttatgccatctaaacaataaaggat 19849354  T

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Target: chr3; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 47 - 120
Target Start/End: Original strand, 20015886 - 20015959
Alignment:
Q  47 atagctgagtctaagaccaacctaacattgtcaattttcaaggcctgaaccttatgccatctaaacaataaagg 120  Q
    ||||||||||||||  ||| | ||||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  20015886 atagctgagtctaatgccaccataacattgtcaattttcaaagcctgaaccttatgccacctaaacaataaagg 20015959  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 47 - 120
Target Start/End: Complemental strand, 19858502 - 19858429
Alignment:
Q  47 atagctgagtctaagaccaacctaacattgtcaattttcaaggcctgaaccttatgccatctaaacaataaagg 120  Q
    ||||| ||||||||  ||||| |||||||||||| ||||||||||| |||||||||||| ||||||||||||||    
T  19858502 atagccgagtctaatgccaacttaacattgtcaactttcaaggccttaaccttatgccacctaaacaataaagg 19858429  T

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Target: chr3; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 141 - 212
Target Start/End: Complemental strand, 19848866 - 19848795
Alignment:
Q  141 aacaggatcaccacctaaaaccatgatatcctccaaagtaagtgttgcctcaccaaagggaaacacaaaggt 212  Q
    |||||||| ||| |||| ||||||||||||||||||||| | |||||| |||||||||| ||||||||||||    
T  19848866 aacaggataaccccctagaaccatgatatcctccaaagtgattgttgcttcaccaaaggaaaacacaaaggt 19848795  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 52 - 120
Target Start/End: Complemental strand, 20046548 - 20046480
Alignment:
Q  52 tgagtctaagaccaacctaacattgtcaattttcaaggcctgaaccttatgccatctaaacaataaagg 120  Q
    |||||||||  ||||| ||||||| ||||||||||| || |||||||||||||| ||||||||||||||    
T  20046548 tgagtctaatgccaacttaacattatcaattttcaatgcgtgaaccttatgccacctaaacaataaagg 20046480  T

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Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 69 - 120
Target Start/End: Complemental strand, 17115124 - 17115073
Alignment:
Q  69 taacattgtcaattttcaaggcctgaaccttatgccatctaaacaataaagg 120  Q
    |||||||||||||||||| |||||||||| ||||||| ||||||||||||||    
T  17115124 taacattgtcaattttcacggcctgaaccctatgccacctaaacaataaagg 17115073  T

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Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 116
Target Start/End: Original strand, 24839666 - 24839731
Alignment:
Q  51 ctgagtctaagaccaacctaacattgtcaattttcaaggcctgaaccttatgccatctaaacaata 116  Q
    ||||||||||  ||||||| |||||||||||||||||||||| ||| |||||||| || |||||||    
T  24839666 ctgagtctaatgccaacctcacattgtcaattttcaaggccttaacattatgccacctcaacaata 24839731  T

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Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 48 - 120
Target Start/End: Complemental strand, 19818992 - 19818920
Alignment:
Q  48 tagctgagtctaagaccaacctaacattgtcaattttcaaggcctgaaccttatgccatctaaacaataaagg 120  Q
    |||| ||||||||  ||| ||||||||||||||||| |||||||||||| | |||||| |||||||| |||||    
T  19818992 tagccgagtctaatgccatcctaacattgtcaatttccaaggcctgaacatcatgccacctaaacaaaaaagg 19818920  T

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Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 40 - 116
Target Start/End: Complemental strand, 19944154 - 19944078
Alignment:
Q  40 atcattcatagctgagtctaagaccaacctaacattgtcaattttcaaggcctgaaccttatgccatctaaacaata 116  Q
    |||||| |||||||| |||||  ||||||  |||||||||||||||||||||| ||| |||||||| || |||||||    
T  19944154 atcattgatagctgaatctaatgccaaccccacattgtcaattttcaaggccttaacattatgccacctcaacaata 19944078  T

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Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 41 - 125
Target Start/End: Complemental strand, 19956523 - 19956439
Alignment:
Q  41 tcattcatagctgagtctaagaccaacctaacattgtcaattttcaaggcctgaaccttatgccatctaaacaataaaggattcc 125  Q
    |||| |||||| ||||||||  ||| |||||||||||||| | |||||| || |||||||||||| |||||||| ||||| ||||    
T  19956523 tcatccatagccgagtctaatgccatcctaacattgtcaactatcaagggcttaaccttatgccacctaaacaaaaaagggttcc 19956439  T

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Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 141 - 209
Target Start/End: Original strand, 20036845 - 20036913
Alignment:
Q  141 aacaggatcaccacctaaaaccatgatatcctccaaagtaagtgttgcctcaccaaagggaaacacaaa 209  Q
    |||||||| ||| |||| ||||||||||||||||||| | | |||||| |||||||||| |||||||||    
T  20036845 aacaggataacctcctagaaccatgatatcctccaaaatgactgttgcttcaccaaaggaaaacacaaa 20036913  T

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Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 144 - 212
Target Start/End: Complemental strand, 26646886 - 26646818
Alignment:
Q  144 aggatcaccacctaaaaccatgatatcctccaaagtaagtgttgcctcaccaaagggaaacacaaaggt 212  Q
    ||||| ||| || |||||||||||||||||||||||||  ||||| |||||||||| || |||||||||    
T  26646886 aggataaccccccaaaaccatgatatcctccaaagtaatagttgcttcaccaaaggcaatcacaaaggt 26646818  T

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Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 215
Target Start/End: Original strand, 20005219 - 20005298
Alignment:
Q  136 gtgaaaacaggatcaccacctaaaaccatgatatcctccaaagtaagtgttgcctcaccaaagggaaacacaaaggtgtt 215  Q
    ||||||||||||| ||| || ||||| |||| ||| |||||||| | |||||| ||||||||  ||||||||||||||||    
T  20005219 gtgaaaacaggataaccccccaaaacaatgacatcttccaaagtgattgttgcttcaccaaatagaaacacaaaggtgtt 20005298  T

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Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 120
Target Start/End: Original strand, 20036282 - 20036361
Alignment:
Q  41 tcattcatagctgagtctaagaccaacctaacattgtcaattttcaaggcctgaaccttatgccatctaaacaataaagg 120  Q
    |||| |||||| ||||||||  ||| |||||||||||||||  |||||| || |||||||||||| |||||||| |||||    
T  20036282 tcatccatagccgagtctaatgccatcctaacattgtcaatcatcaagggcttaaccttatgccacctaaacaaaaaagg 20036361  T

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Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 114
Target Start/End: Complemental strand, 19832295 - 19832235
Alignment:
Q  54 agtctaagaccaacctaacattgtcaattttcaaggcctgaaccttatgccatctaaacaa 114  Q
    |||||||  ||| ||||||||||||||||  |||||||| |||||||||||| ||||||||    
T  19832295 agtctaatgccatcctaacattgtcaattaccaaggccttaaccttatgccacctaaacaa 19832235  T

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Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 209
Target Start/End: Complemental strand, 19838247 - 19838195
Alignment:
Q  157 aaaaccatgatatcctccaaagtaagtgttgcctcaccaaagggaaacacaaa 209  Q
    |||||||||| ||| |||||||| | ||||||||||||||| |||||||||||    
T  19838247 aaaaccatgacatcttccaaagtgattgttgcctcaccaaatggaaacacaaa 19838195  T

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Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 209
Target Start/End: Complemental strand, 19955938 - 19955886
Alignment:
Q  157 aaaaccatgatatcctccaaagtaagtgttgcctcaccaaagggaaacacaaa 209  Q
    |||||||||| ||| |||||||| | ||||||||||||||| |||||||||||    
T  19955938 aaaaccatgacatcttccaaagtgattgttgcctcaccaaatggaaacacaaa 19955886  T

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Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 215
Target Start/End: Complemental strand, 19818433 - 19818362
Alignment:
Q  144 aggatcaccacctaaaaccatgatatcctccaaagtaagtgttgcctcaccaaagggaaacacaaaggtgtt 215  Q
    ||||| ||| || ||||| |||| |||||||||||| |  |||||||||||||| ||||| |||||||||||    
T  19818433 aggataaccccccaaaactatgacatcctccaaagtgatagttgcctcaccaaatggaaaaacaaaggtgtt 19818362  T

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Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 215
Target Start/End: Complemental strand, 19812143 - 19812085
Alignment:
Q  157 aaaaccatgatatcctccaaagtaagtgttgcctcaccaaagggaaacacaaaggtgtt 215  Q
    |||||||| |||||||||||||| |  ||||| |||||||| ||||| |||||||||||    
T  19812143 aaaaccataatatcctccaaagtgatagttgcttcaccaaatggaaaaacaaaggtgtt 19812085  T

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Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 210
Target Start/End: Complemental strand, 26651896 - 26651843
Alignment:
Q  157 aaaaccatgatatcctccaaagtaagtgttgcctcaccaaagggaaacacaaag 210  Q
    ||||| |||| |||||||||||| | ||||||||||||||| ||||| ||||||    
T  26651896 aaaacaatgacatcctccaaagtgattgttgcctcaccaaaaggaaaaacaaag 26651843  T

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Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 209
Target Start/End: Complemental strand, 19950987 - 19950935
Alignment:
Q  157 aaaaccatgatatcctccaaagtaagtgttgcctcaccaaagggaaacacaaa 209  Q
    |||||||| | |||||||||||| |  |||||||||||||| |||||||||||    
T  19950987 aaaaccataacatcctccaaagtgatagttgcctcaccaaatggaaacacaaa 19950935  T

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Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 40 - 120
Target Start/End: Complemental strand, 9815474 - 9815394
Alignment:
Q  40 atcattcatagctgagtctaagaccaacctaacattgtcaattttcaaggcctgaaccttatgccatctaaacaataaagg 120  Q
    ||||| |||||| ||||||||  ||| | |||||||||||||||||||||||||||||||||| || ||||||||||||||    
T  9815474 atcatccatagccgagtctaatgccagcttaacattgtcaattttcaaggcctgaaccttatgtcacctaaacaataaagg 9815394  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 40 - 120
Target Start/End: Original strand, 26354605 - 26354685
Alignment:
Q  40 atcattcatagctgagtctaagaccaacctaacattgtcaattttcaaggcctgaaccttatgccatctaaacaataaagg 120  Q
    |||||| |||||  |||||||  ||| | |||||||||||||||||||||| || ||| ||||||||||||||||||||||    
T  26354605 atcattgatagccaagtctaattccagcttaacattgtcaattttcaaggcttgtaccctatgccatctaaacaataaagg 26354685  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 128 - 166
Target Start/End: Original strand, 22685874 - 22685912
Alignment:
Q  128 gaagtgaagtgaaaacaggatcaccacctaaaaccatga 166  Q
    |||||||||||||||||||||||||||||||||||||||    
T  22685874 gaagtgaagtgaaaacaggatcaccacctaaaaccatga 22685912  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 118
Target Start/End: Complemental strand, 12497616 - 12497567
Alignment:
Q  69 taacattgtcaattttcaaggcctgaaccttatgccatctaaacaataaa 118  Q
    |||||||| |||||||||||||| ||||||||||||| || |||||||||    
T  12497616 taacattgccaattttcaaggccagaaccttatgccacctcaacaataaa 12497567  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 118
Target Start/End: Complemental strand, 12521481 - 12521432
Alignment:
Q  69 taacattgtcaattttcaaggcctgaaccttatgccatctaaacaataaa 118  Q
    |||||||| |||||||||||||| ||||||||||||| || |||||||||    
T  12521481 taacattgccaattttcaaggccagaaccttatgccacctcaacaataaa 12521432  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 120
Target Start/End: Original strand, 12579781 - 12579849
Alignment:
Q  52 tgagtctaagaccaacctaacattgtcaattttcaaggcctgaaccttatgccatctaaacaataaagg 120  Q
    |||||||||  | ||| ||||||||||||||| ||||||||||||||||| | | |||| |||||||||    
T  12579781 tgagtctaatgcaaacttaacattgtcaatttgcaaggcctgaaccttattcaacctaagcaataaagg 12579849  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 119
Target Start/End: Original strand, 12519486 - 12519553
Alignment:
Q  52 tgagtctaagaccaacctaacattgtcaattttcaaggcctgaaccttatgccatctaaacaataaag 119  Q
    |||||||||  | ||| ||||||||||||||| ||||||||||||||||| | | |||| ||||||||    
T  12519486 tgagtctaatgcaaacttaacattgtcaatttgcaaggcctgaaccttattcaacctaagcaataaag 12519553  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 120
Target Start/End: Original strand, 12495703 - 12495753
Alignment:
Q  70 aacattgtcaattttcaaggcctgaaccttatgccatctaaacaataaagg 120  Q
    |||||||||||||| ||||||||||||||||| | | |||| |||||||||    
T  12495703 aacattgtcaatttgcaaggcctgaaccttattcaacctaagcaataaagg 12495753  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 120
Target Start/End: Original strand, 6397440 - 6397497
Alignment:
Q  63 ccaacctaacattgtcaattttcaaggcctgaaccttatgccatctaaacaataaagg 120  Q
    ||||| ||| |||||||||||| |||||||||||||||| ||| ||||| ||||||||    
T  6397440 ccaacttaatattgtcaattttaaaggcctgaaccttataccacctaaaaaataaagg 6397497  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 6397999 - 6398039
Alignment:
Q  163 atgatatcctccaaagtaagtgttgcctcaccaaagggaaa 203  Q
    ||||||||||||||||| | |||||||||||||||||||||    
T  6397999 atgatatcctccaaagttattgttgcctcaccaaagggaaa 6398039  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 6398118 - 6398078
Alignment:
Q  163 atgatatcctccaaagtaagtgttgcctcaccaaagggaaa 203  Q
    |||||||||| |||||| | |||||||||||||||||||||    
T  6398118 atgatatccttcaaagttattgttgcctcaccaaagggaaa 6398078  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 209
Target Start/End: Complemental strand, 1717080 - 1717025
Alignment:
Q  154 cctaaaaccatgatatcctccaaagtaagtgttgcctcaccaaagggaaacacaaa 209  Q
    ||||||||||| |||||||||||||| | ||| || |||||||| |||||||||||    
T  1717080 cctaaaaccataatatcctccaaagtgattgtggcttcaccaaaaggaaacacaaa 1717025  T

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