View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324A_low_371 (Length: 233)
Name: NF11324A_low_371
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_371 |
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Alignment Details
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 11421001 - 11421049
Alignment:
| Q |
16 |
caacaagatcgtgggaaaatgaaagtttactaaagagcctttcatacacg |
65 |
Q |
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| T |
11421001 |
caacaagatcatgggaaaatgaa-gtttactaaagagccttttatacacg |
11421049 |
T |
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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 165
Target Start/End: Original strand, 11421144 - 11421173
Alignment:
| Q |
136 |
ttgtaatacattcacttacttggccgaggc |
165 |
Q |
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| T |
11421144 |
ttgtaatacattcacttacttggccgaggc |
11421173 |
T |
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