View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11324A_low_372 (Length: 232)

Name: NF11324A_low_372
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11324A_low_372
NF11324A_low_372
[»] chr3 (4 HSPs)
chr3 (22-225)||(28767329-28767540)
chr3 (131-215)||(20269874-20269964)
chr3 (180-219)||(55242395-55242434)
chr3 (117-173)||(48596773-48596828)
[»] chr7 (11 HSPs)
chr7 (124-219)||(22797582-22797683)
chr7 (125-217)||(7932352-7932450)
chr7 (117-219)||(39894859-39894969)
chr7 (131-219)||(23839360-23839454)
chr7 (124-219)||(1011475-1011576)
chr7 (124-219)||(1012337-1012438)
chr7 (124-219)||(38609351-38609458)
chr7 (132-219)||(28369342-28369435)
chr7 (133-213)||(29907246-29907332)
chr7 (173-219)||(5579026-5579072)
chr7 (131-219)||(322005-322099)
[»] chr4 (13 HSPs)
chr4 (117-220)||(44897895-44898004)
chr4 (117-219)||(6848614-6848722)
chr4 (131-219)||(39437241-39437335)
chr4 (124-220)||(41223996-41224097)
chr4 (124-220)||(50848129-50848231)
chr4 (131-219)||(37079058-37079152)
chr4 (124-219)||(47442027-47442128)
chr4 (124-219)||(49529553-49529654)
chr4 (174-216)||(16184951-16184993)
chr4 (124-219)||(37078329-37078430)
chr4 (173-213)||(13188113-13188153)
chr4 (132-173)||(28501848-28501889)
chr4 (175-219)||(34611934-34611978)
[»] chr8 (11 HSPs)
chr8 (124-217)||(18471181-18471280)
chr8 (131-220)||(8472736-8472831)
chr8 (134-219)||(32593583-32593674)
chr8 (124-215)||(32051609-32051706)
chr8 (131-219)||(8471960-8472054)
chr8 (124-219)||(7066125-7066226)
chr8 (124-219)||(33493804-33493904)
chr8 (124-217)||(541607-541706)
chr8 (124-209)||(8194435-8194525)
chr8 (173-217)||(20075667-20075711)
chr8 (124-173)||(32690187-32690235)
[»] chr1 (6 HSPs)
chr1 (124-215)||(37827913-37828010)
chr1 (126-219)||(32754922-32755021)
chr1 (124-219)||(1908258-1908359)
chr1 (124-219)||(25104726-25104827)
chr1 (124-219)||(45395863-45395964)
chr1 (124-173)||(14614003-14614052)
[»] chr6 (1 HSPs)
chr6 (124-219)||(15869358-15869459)
[»] chr5 (7 HSPs)
chr5 (124-219)||(27827519-27827624)
chr5 (131-219)||(7518924-7519018)
chr5 (124-219)||(4445535-4445636)
chr5 (124-217)||(43432094-43432193)
chr5 (124-219)||(4446450-4446552)
chr5 (152-215)||(27828359-27828428)
chr5 (179-219)||(27827436-27827476)
[»] chr2 (11 HSPs)
chr2 (131-219)||(37469256-37469350)
chr2 (122-212)||(11493850-11493948)
chr2 (131-219)||(24201300-24201394)
chr2 (131-219)||(33896752-33896846)
chr2 (124-219)||(23221027-23221128)
chr2 (150-219)||(17625811-17625886)
chr2 (150-219)||(17670198-17670273)
chr2 (124-219)||(14931879-14931980)
chr2 (107-217)||(2007065-2007179)
chr2 (173-219)||(25432756-25432802)
chr2 (118-146)||(13220058-13220086)


Alignment Details
Target: chr3 (Bit Score: 162; Significance: 1e-86; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 22 - 225
Target Start/End: Original strand, 28767329 - 28767540
Alignment:
Q  22 gttcaactcacccttcagtttataagagatgattaatttagttgaaaatttgaatgagtctctaaaatatatgtaaactcttcgtaaattgtgtttaaat 121  Q
    ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  28767329 gttcacctcacccttcagtttataagagatgattaatgtagttgaaaatttgaatgagtctctaaaatatatgtaaactcttcgtaaattgtgtgtaaat 28767428  T
Q  122 tatgtgt--ccataatgagatcacacaccctgtatttataatggttttacaa------tattgaatgcttaatgagtaagcactagcctaggaagttgta 213  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||    
T  28767429 tatgtgtgcccataatgagatcacacaccctgtatttataatggttttacaataaatgtattgaatgcttaatgagtaagcactagcctaggaagttgta 28767528  T
Q  214 tactcttctttt 225  Q
    ||||||| ||||    
T  28767529 tactcttttttt 28767540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 131 - 215
Target Start/End: Original strand, 20269874 - 20269964
Alignment:
Q  131 ataatgagatcacacaccctgtatttataatggttttacaat------attgaatgcttaatgagtaagcactagcctaggaagttgtata 215  Q
    |||||||||||||||||| ||||| ||||||| |||||||||      ||||||| |||||| ||||||||||| ||||||||||||||||    
T  20269874 ataatgagatcacacaccttgtatctataatgattttacaataaatacattgaatacttaattagtaagcactaacctaggaagttgtata 20269964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 219
Target Start/End: Complemental strand, 55242434 - 55242395
Alignment:
Q  180 gcttaatgagtaagcactagcctaggaagttgtatactct 219  Q
    ||||||||| ||||||||| ||||||||||||||||||||    
T  55242434 gcttaatgaataagcactaacctaggaagttgtatactct 55242395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 173
Target Start/End: Original strand, 48596773 - 48596828
Alignment:
Q  117 taaattatgtgtccataatgagatcacacaccctgtatttataatggttttacaata 173  Q
    |||||| |||||| ||||||||||||||| || | |||||||||||||| |||||||    
T  48596773 taaattgtgtgtctataatgagatcacac-ccttctatttataatggttatacaata 48596828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 124 - 219
Target Start/End: Complemental strand, 22797683 - 22797582
Alignment:
Q  124 tgtgtccataatgagatcacacaccctgtatttataatggttttacaat------attgaatgcttaatgagtaagcactagcctaggaagttgtatact 217  Q
    |||||| |||||||||||||||||| |||||||||||||||||||||||      |||||||||||||||||||| ||||||| ||||||||||||||||    
T  22797683 tgtgtctataatgagatcacacaccttgtatttataatggttttacaataaatacattgaatgcttaatgagtaaacactagcttaggaagttgtatact 22797584  T
Q  218 ct 219  Q
    ||    
T  22797583 ct 22797582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 125 - 217
Target Start/End: Complemental strand, 7932450 - 7932352
Alignment:
Q  125 gtgtccataatgagatcacacaccctgtatttataatggttttacaata------ttgaatgcttaatgagtaagcactagcctaggaagttgtatact 217  Q
    ||||| |||||||||||||||||  ||||||||||||| ||||||||||      ||||||||||||||||||||||||||||||||||||||||||||    
T  7932450 gtgtctataatgagatcacacacattgtatttataatgattttacaataaattaattgaatgcttaatgagtaagcactagcctaggaagttgtatact 7932352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 117 - 219
Target Start/End: Complemental strand, 39894969 - 39894859
Alignment:
Q  117 taaattatgtgtccataatgagatcacacaccc--tgtatttataatggttttacaata------ttgaatgcttaatgagtaagcactagcctaggaag 208  Q
    |||||| |||||| ||||||||||||||||| |  ||||||||||| | ||||||||||      |||||||||||||||||| ||||||||||||||||    
T  39894969 taaattctgtgtctataatgagatcacacacaccttgtatttataacgattttacaataaatgcattgaatgcttaatgagtaggcactagcctaggaag 39894870  T
Q  209 ttgtatactct 219  Q
    |||||||||||    
T  39894869 ttgtatactct 39894859  T

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Target: chr7; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 131 - 219
Target Start/End: Complemental strand, 23839454 - 23839360
Alignment:
Q  131 ataatgagatcacacaccctgtatttataatggttttacaata------ttgaatgcttaatgagtaagcactagcctaggaagttgtatactct 219  Q
    |||||||||||||||| | ||||||||||||||||||||||||      ||||||||||||| |||||||||||||||||||||||  |||||||    
T  23839454 ataatgagatcacacaacttgtatttataatggttttacaataagtgcattgaatgcttaattagtaagcactagcctaggaagttaaatactct 23839360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 124 - 219
Target Start/End: Complemental strand, 1011576 - 1011475
Alignment:
Q  124 tgtgtccataatgagatcacacaccctgtatttataatggttttacaata------ttgaatgcttaatgagtaagcactagcctaggaagttgtatact 217  Q
    |||||| |||||||||||||||| | |||||||||||||| |||||||||      ||||||||||| | |||||||||||||||||||||||| |||||    
T  1011576 tgtgtctataatgagatcacacagcttgtatttataatggctttacaataaatacattgaatgcttatttagtaagcactagcctaggaagttgaatact 1011477  T
Q  218 ct 219  Q
    ||    
T  1011476 ct 1011475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 124 - 219
Target Start/End: Complemental strand, 1012438 - 1012337
Alignment:
Q  124 tgtgtccataatgagatcacacaccctgtatttataatggttttacaata------ttgaatgcttaatgagtaagcactagcctaggaagttgtatact 217  Q
    |||||| |||||||||||||||| | |||||||||||||| |||||||||      ||||||||||| | |||||||||||||||||||||||| |||||    
T  1012438 tgtgtctataatgagatcacacagcttgtatttataatggctttacaataaatacattgaatgcttatttagtaagcactagcctaggaagttgaatact 1012339  T
Q  218 ct 219  Q
    ||    
T  1012338 ct 1012337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 124 - 219
Target Start/End: Complemental strand, 38609458 - 38609351
Alignment:
Q  124 tgtgtccataatgagatcacacaccctgtatttataatggttttacaa------------tattgaatgcttaatgagtaagcactagcctaggaagttg 211  Q
    |||||| |||||||||||||||||| ||||||||||||||||||||||            ||| |||||||||||||||| |||||||||||||||||||    
T  38609458 tgtgtctataatgagatcacacaccttgtatttataatggttttacaataaaaataaatgtatcgaatgcttaatgagtacgcactagcctaggaagttg 38609359  T
Q  212 tatactct 219  Q
    ||||||||    
T  38609358 tatactct 38609351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 132 - 219
Target Start/End: Complemental strand, 28369435 - 28369342
Alignment:
Q  132 taatgagatcacacaccctgtatttataatggttttacaat------attgaatgcttaatgagtaagcactagcctaggaagttgtatactct 219  Q
    ||||||||||||| ||| |||||||||||||||||||||||      ||||| |||||||  ||||||||||||||| ||||||||||||||||    
T  28369435 taatgagatcacagaccttgtatttataatggttttacaataaatacattgagtgcttaactagtaagcactagcctcggaagttgtatactct 28369342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 133 - 213
Target Start/End: Complemental strand, 29907332 - 29907246
Alignment:
Q  133 aatgagatcacacaccctgtatttataatggttttacaat------attgaatgcttaatgagtaagcactagcctaggaagttgta 213  Q
    |||||||||||||||| ||||||||||||||||||||| |      |||||||||||| | ||||||||||||||| ||||||||||    
T  29907332 aatgagatcacacaccttgtatttataatggttttacactaaatgcattgaatgcttagtaagtaagcactagccttggaagttgta 29907246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 173 - 219
Target Start/End: Complemental strand, 5579072 - 5579026
Alignment:
Q  173 attgaatgcttaatgagtaagcactagcctaggaagttgtatactct 219  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||    
T  5579072 attgaatgcttaatgagcaagcactagcctaggaagttgtatactct 5579026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 131 - 219
Target Start/End: Complemental strand, 322099 - 322005
Alignment:
Q  131 ataatgagatcacacaccctgtatttataatggttttacaat------attgaatgcttaatgagtaagcactagcctaggaagttgtatactct 219  Q
    |||||||||||||||||| |||||||||||||  ||||||||      |||||||||||| | ||||||||||| || ||||||||| |||||||    
T  322099 ataatgagatcacacaccttgtatttataatgcctttacaataaatacattgaatgcttatttagtaagcactaacccaggaagttgaatactct 322005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 117 - 220
Target Start/End: Original strand, 44897895 - 44898004
Alignment:
Q  117 taaattatgtgtccataatgagatcacacaccctgtatttataatggttttacaat------attgaatgcttaatgagtaagcactagcctaggaagtt 210  Q
    |||||| |||||| |||||||||||||||||| |||||||||||||||||||||||      ||||||||||||||||||||| ||||||||||||||      
T  44897895 taaattctgtgtctataatgagatcacacaccttgtatttataatggttttacaataagtgcattgaatgcttaatgagtaagaactagcctaggaagga 44897994  T
Q  211 gtatactctt 220  Q
    ||||||||||    
T  44897995 gtatactctt 44898004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 117 - 219
Target Start/End: Original strand, 6848614 - 6848722
Alignment:
Q  117 taaattatgtgtccataatgagatcacacaccctgtatttataatggttttacaatat------tgaatgcttaatgagtaagcactagcctaggaagtt 210  Q
    |||||| || ||| |||||||||||||||||| ||||||  ||||||||||||||||       ||||||||||||||||||||||||||||||||||||    
T  6848614 taaattctgcgtctataatgagatcacacaccttgtattattaatggttttacaataaatgcaatgaatgcttaatgagtaagcactagcctaggaagtt 6848713  T
Q  211 gtatactct 219  Q
    |||||||||    
T  6848714 gtatactct 6848722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 131 - 219
Target Start/End: Complemental strand, 39437335 - 39437241
Alignment:
Q  131 ataatgagatcacacaccctgtatttataatggttttacaata------ttgaatgcttaatgagtaagcactagcctaggaagttgtatactct 219  Q
    |||||||||||||||| | |||||||||||||| |||||||||      ||||||||||| | |||||||||||||||||||||||| |||||||    
T  39437335 ataatgagatcacacagcttgtatttataatggctttacaataaatacattgaatgcttatttagtaagcactagcctaggaagttgaatactct 39437241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 124 - 220
Target Start/End: Complemental strand, 41224097 - 41223996
Alignment:
Q  124 tgtgtccataatgagatcacacaccctgtatttataatggttttacaata------ttgaatgcttaatgagtaagcactagcctaggaagttgtatact 217  Q
    |||||| ||||||||||||||| || ||||||||| ||||||||||||||      ||||||||||| | ||| ||||||||||||||||||||||||||    
T  41224097 tgtgtctataatgagatcacac-ccttgtatttatgatggttttacaataaatacattgaatgcttatttagtgagcactagcctaggaagttgtatact 41223999  T
Q  218 ctt 220  Q
    |||    
T  41223998 ctt 41223996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 124 - 220
Target Start/End: Original strand, 50848129 - 50848231
Alignment:
Q  124 tgtgtccataatgagatcacacaccctgtatttataatggttttacaata------ttgaatgcttaatgagtaagcactagcctaggaagttgtatact 217  Q
    |||||| ||||||||||||| |||| ||||| |||||||| ||||||| |      ||||||||||||| |||||||||||||||||||||||| |||||    
T  50848129 tgtgtctataatgagatcactcaccttgtatctataatggctttacaaaaaatacattgaatgcttaattagtaagcactagcctaggaagttgaatact 50848228  T
Q  218 ctt 220  Q
    |||    
T  50848229 ctt 50848231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 131 - 219
Target Start/End: Complemental strand, 37079152 - 37079058
Alignment:
Q  131 ataatgagatcacacaccctgtatttataatggttttacaata------ttgaatgcttaatgagtaagcactagcctaggaagttgtatactct 219  Q
    |||||||||||||||| | |||||||||||||| |||||||||      ||||||||||| | |||||||| ||||||||||||||| |||||||    
T  37079152 ataatgagatcacacagcttgtatttataatggctttacaataaatacattgaatgcttatttagtaagcagtagcctaggaagttgaatactct 37079058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 124 - 219
Target Start/End: Original strand, 47442027 - 47442128
Alignment:
Q  124 tgtgtccataatgagatcacacaccctgtatttataatggttttacaata------ttgaatgcttaatgagtaagcactagcctaggaagttgtatact 217  Q
    |||||| |||| |||||||||| |  |||||||| |||||||||||||||      ||||||||||||| |||||||||||| |||| ||||||||||||    
T  47442027 tgtgtctataacgagatcacactctttgtatttacaatggttttacaataaatgcattgaatgcttaattagtaagcactagactagcaagttgtatact 47442126  T
Q  218 ct 219  Q
    ||    
T  47442127 ct 47442128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 124 - 219
Target Start/End: Complemental strand, 49529654 - 49529553
Alignment:
Q  124 tgtgtccataatgagatcacacaccctgtatttataatggttttacaata------ttgaatgcttaatgagtaagcactagcctaggaagttgtatact 217  Q
    |||||| |||||||||||||| | | |||||||||||||| ||||| |||      ||||||||||| | |||||||||||||||||||||||| |||||    
T  49529654 tgtgtctataatgagatcacaaagcttgtatttataatggctttaccataaatacattgaatgcttatttagtaagcactagcctaggaagttgaatact 49529555  T
Q  218 ct 219  Q
    ||    
T  49529554 ct 49529553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 174 - 216
Target Start/End: Complemental strand, 16184993 - 16184951
Alignment:
Q  174 ttgaatgcttaatgagtaagcactagcctaggaagttgtatac 216  Q
    ||||||||||||||||||||||||||||||||||| |||||||    
T  16184993 ttgaatgcttaatgagtaagcactagcctaggaagctgtatac 16184951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 124 - 219
Target Start/End: Complemental strand, 37078430 - 37078329
Alignment:
Q  124 tgtgtccataatgagatcacacaccctgtatttataatggttttacaat------attgaatgcttaatgagtaagcactagcctaggaagttgtatact 217  Q
    |||||| |||||||||||||||| | |||||||||||||| ||||||||      |||||||||||| | ||||| || |||||||| |||||| |||||    
T  37078430 tgtgtctataatgagatcacacagcttgtatttataatggctttacaataaatacattgaatgcttatttagtaaacagtagcctagaaagttgaatact 37078331  T
Q  218 ct 219  Q
    ||    
T  37078330 ct 37078329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 173 - 213
Target Start/End: Complemental strand, 13188153 - 13188113
Alignment:
Q  173 attgaatgcttaatgagtaagcactagcctaggaagttgta 213  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  13188153 attgaatggttaatgagtaagcactagcctaggaagttgta 13188113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 173
Target Start/End: Original strand, 28501848 - 28501889
Alignment:
Q  132 taatgagatcacacaccctgtatttataatggttttacaata 173  Q
    ||||||||||||||||| ||||| ||||||||||||||||||    
T  28501848 taatgagatcacacaccttgtatatataatggttttacaata 28501889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 219
Target Start/End: Complemental strand, 34611978 - 34611934
Alignment:
Q  175 tgaatgcttaatgagtaagcactagcctaggaagttgtatactct 219  Q
    |||||||||||||  ||||||||| ||||||| ||||||||||||    
T  34611978 tgaatgcttaatggataagcactaacctaggatgttgtatactct 34611934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 2e-26; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 124 - 217
Target Start/End: Original strand, 18471181 - 18471280
Alignment:
Q  124 tgtgtccataatgagatcacacaccctgtatttataatggttttacaata------ttgaatgcttaatgagtaagcactagcctaggaagttgtatact 217  Q
    |||||| |||||||||||||||||| |||||||||||||||||||| |||      ||||||||||||||||||||||||| ||||||||||||||||||    
T  18471181 tgtgtctataatgagatcacacaccttgtatttataatggttttacgataaatgcattgaatgcttaatgagtaagcactaccctaggaagttgtatact 18471280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 131 - 220
Target Start/End: Complemental strand, 8472831 - 8472736
Alignment:
Q  131 ataatgagatcacacaccctgtatttataatggttttacaat------attgaatgcttaatgagtaagcactagcctaggaagttgtatactctt 220  Q
    |||||||||||||||||| |||||||||||||||||||||||      |||||||||||||| |||||||||||||||| ||||||| ||||||||    
T  8472831 ataatgagatcacacaccttgtatttataatggttttacaataggtgcattgaatgcttaattagtaagcactagcctaagaagttgaatactctt 8472736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 134 - 219
Target Start/End: Complemental strand, 32593674 - 32593583
Alignment:
Q  134 atgagatcacacaccctgtatttataatggttttacaata------ttgaatgcttaatgagtaagcactagcctaggaagttgtatactct 219  Q
    ||||||||||||||| ||||||||||||||||||| ||||      ||||||||||||| ||||||||||||||||||||||||||||||||    
T  32593674 atgagatcacacaccttgtatttataatggttttataataaatacattgaatgcttaattagtaagcactagcctaggaagttgtatactct 32593583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 124 - 215
Target Start/End: Original strand, 32051609 - 32051706
Alignment:
Q  124 tgtgtccataatgagatcacacaccctgtatttataatggttttacaata------ttgaatgcttaatgagtaagcactagcctaggaagttgtata 215  Q
    |||||| ||||||| |||| ||||| ||||||||||||||||||||||||      ||||| ||||||| ||||||||||||||||||||||||||||    
T  32051609 tgtgtctataatgatatcatacaccttgtatttataatggttttacaataaatacattgaacgcttaattagtaagcactagcctaggaagttgtata 32051706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 131 - 219
Target Start/End: Complemental strand, 8472054 - 8471960
Alignment:
Q  131 ataatgagatcacacaccctgtatttataatggttttacaata------ttgaatgcttaatgagtaagcactagcctaggaagttgtatactct 219  Q
    ||||||| |||||||||| ||||||||||||||||||| ||||      ||||||||||||| |||||||||||||||||| ||||| |||||||    
T  8472054 ataatgaaatcacacaccttgtatttataatggttttagaataagtgcattgaatgcttaattagtaagcactagcctagggagttgaatactct 8471960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 124 - 219
Target Start/End: Original strand, 7066125 - 7066226
Alignment:
Q  124 tgtgtccataatgagatcacacaccctgtatttataatggttttacaat------attgaatgcttaatgagtaagcactagcctaggaagttgtatact 217  Q
    |||||| |||||||||||||||||| |||| |||||||| |||||||||      ||||||| ||| || |||||||||||||||||||||||| |||||    
T  7066125 tgtgtctataatgagatcacacaccttgtaattataatgattttacaattagtgcattgaatacttcattagtaagcactagcctaggaagttgaatact 7066224  T
Q  218 ct 219  Q
    ||    
T  7066225 ct 7066226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 124 - 219
Target Start/End: Original strand, 33493804 - 33493904
Alignment:
Q  124 tgtgtccataatgagatcacacaccctgtatttataatggttttacaat------attgaatgcttaatgagtaagcactagcctaggaagttgtatact 217  Q
    |||||| |||||||||||||||| | ||||||||||||| |||||||||      ||||||||| || | ||||||||||||||||| |||||| |||||    
T  33493804 tgtgtctataatgagatcacacatcttgtatttataatgattttacaataaatacattgaatgc-tatttagtaagcactagcctagaaagttgaatact 33493902  T
Q  218 ct 219  Q
    ||    
T  33493903 ct 33493904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 124 - 217
Target Start/End: Original strand, 541607 - 541706
Alignment:
Q  124 tgtgtccataatgagatcacacaccctgtatttataatggttttacaat------attgaatgcttaatgagtaagcactagcctaggaagttgtatact 217  Q
    |||||| |||||||||||||||| | | |||||||||| ||||||||||      ||| |||||||||| ||||||||  || |||||||||||||||||    
T  541607 tgtgtcaataatgagatcacacaacttctatttataattgttttacaataaatgcattcaatgcttaattagtaagcaagagactaggaagttgtatact 541706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 124 - 209
Target Start/End: Complemental strand, 8194525 - 8194435
Alignment:
Q  124 tgtgtccataatgagatcacacaccctgtatttataatggttttacaata------ttgaatgcttaatgagtaagcactagcctaggaagt 209  Q
    |||||| |||||||||||||||    ||||||||||||||| ||||||||      ||||||||||||| ||||||||||||||||||||||    
T  8194525 tgtgtctataatgagatcacactat-tgtatttataatggtgttacaataagtgcattgaatgcttaattagtaagcactagcctaggaagt 8194435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 173 - 217
Target Start/End: Original strand, 20075667 - 20075711
Alignment:
Q  173 attgaatgcttaatgagtaagcactagcctaggaagttgtatact 217  Q
    |||| |||||||||||||||||| |||||||||||||||||||||    
T  20075667 attggatgcttaatgagtaagcagtagcctaggaagttgtatact 20075711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 173
Target Start/End: Complemental strand, 32690235 - 32690187
Alignment:
Q  124 tgtgtccataatgagatcacacaccctgtatttataatggttttacaata 173  Q
    |||||| ||||||||||||||| || ||||||||||||||| ||||||||    
T  32690235 tgtgtctataatgagatcacac-ccttgtatttataatggtgttacaata 32690187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 124 - 215
Target Start/End: Complemental strand, 37828010 - 37827913
Alignment:
Q  124 tgtgtccataatgagatcacacaccctgtatttataatggttttacaat------attgaatgcttaatgagtaagcactagcctaggaagttgtata 215  Q
    |||||| |||||||||||||||||| |||||||||||||||||||||||      ||| |||||||||| ||||||||||||||||||||||||||||    
T  37828010 tgtgtctataatgagatcacacaccttgtatttataatggttttacaataaaagcattcaatgcttaataagtaagcactagcctaggaagttgtata 37827913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 126 - 219
Target Start/End: Original strand, 32754922 - 32755021
Alignment:
Q  126 tgtccataatgagatcacacaccctgtatttataatggttttacaat------attgaatgcttaatgagtaagcactagcctaggaagttgtatactct 219  Q
    |||| |||||||||||||||||| |||||||||||||||||||||||      |||||||||||| | ||||||||||| || |||||||||||||||||    
T  32754922 tgtctataatgagatcacacaccttgtatttataatggttttacaataaataaattgaatgcttatttagtaagcactacccaaggaagttgtatactct 32755021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 124 - 219
Target Start/End: Complemental strand, 1908359 - 1908258
Alignment:
Q  124 tgtgtccataatgagatcacacaccctgtatttataatggttttacaata------ttgaatgcttaatgagtaagcactagcctaggaagttgtatact 217  Q
    |||||| |||||||||||||||| | |||||||||||||| |||||||||      ||||||||||| | |||||||||||||||||||||||| |||||    
T  1908359 tgtgtctataatgagatcacacagcttgtatttataatggctttacaataaatacattgaatgcttatttagtaagcactagcctaggaagttgaatact 1908260  T
Q  218 ct 219  Q
    ||    
T  1908259 ct 1908258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 124 - 219
Target Start/End: Original strand, 25104726 - 25104827
Alignment:
Q  124 tgtgtccataatgagatcacacaccctgtatttataatggttttacaata------ttgaatgcttaatgagtaagcactagcctaggaagttgtatact 217  Q
    |||||| |||||||||||||||| | |||||||||||||| |||||||||      ||||||||||| | |||||||||||||||||||||||| |||||    
T  25104726 tgtgtctataatgagatcacacagcttgtatttataatggctttacaataaatacattgaatgcttatttagtaagcactagcctaggaagttgaatact 25104825  T
Q  218 ct 219  Q
    ||    
T  25104826 ct 25104827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 124 - 219
Target Start/End: Complemental strand, 45395964 - 45395863
Alignment:
Q  124 tgtgtccataatgagatcacacaccctgtatttataatggttttacaata------ttgaatgcttaatgagtaagcactagcctaggaagttgtatact 217  Q
    |||||| |||||||||||||||| | |||||||||||||| |||||||||      ||||||||||| | |||||||||||||||||||||||| |||||    
T  45395964 tgtgtctataatgagatcacacagcttgtatttataatggctttacaataaatacattgaatgcttatttagtaagcactagcctaggaagttgaatact 45395865  T
Q  218 ct 219  Q
    ||    
T  45395864 ct 45395863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 124 - 173
Target Start/End: Complemental strand, 14614052 - 14614003
Alignment:
Q  124 tgtgtccataatgagatcacacaccctgtatttataatggttttacaata 173  Q
    |||||| |||||||||||||||| | |||||||||||||| |||||||||    
T  14614052 tgtgtctataatgagatcacacagcttgtatttataatggctttacaata 14614003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 124 - 219
Target Start/End: Original strand, 15869358 - 15869459
Alignment:
Q  124 tgtgtccataatgagatcacacaccctgtatttataatggttttacaata------ttgaatgcttaatgagtaagcactagcctaggaagttgtatact 217  Q
    |||||| ||||||||| ||||| || ||||||||||||||||||||||||      |||||||||||||||||||||||||||||| ||||||| |||||    
T  15869358 tgtgtctataatgagaacacacgccttgtatttataatggttttacaataaatacattgaatgcttaatgagtaagcactagcctatgaagttgcatact 15869457  T
Q  218 ct 219  Q
    ||    
T  15869458 ct 15869459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 124 - 219
Target Start/End: Original strand, 27827519 - 27827624
Alignment:
Q  124 tgtgtccataatgagatcacacaccctgtatttataatggttttacaat------attgaa----tgcttaatgagtaagcactagcctaggaagttgta 213  Q
    ||||||| ||||||||||||||||| |||||||||||||||||||||||      ||||||    |||||||| ||||||||||||||||||||||||||    
T  27827519 tgtgtccgtaatgagatcacacaccttgtatttataatggttttacaataaacaaattgaatgcttgcttaataagtaagcactagcctaggaagttgta 27827618  T
Q  214 tactct 219  Q
    ||||||    
T  27827619 tactct 27827624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 131 - 219
Target Start/End: Complemental strand, 7519018 - 7518924
Alignment:
Q  131 ataatgagatcacacaccctgtatttataatggttttacaata------ttgaatgcttaatgagtaagcactagcctaggaagttgtatactct 219  Q
    ||||||||||  |||||| ||||||||||| ||||||||||||      ||||| ||||||| ||||||||||||||||||||||||||||||||    
T  7519018 ataatgagattgcacaccttgtatttataacggttttacaataaaagcattgaaagcttaataagtaagcactagcctaggaagttgtatactct 7518924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 124 - 219
Target Start/End: Complemental strand, 4445636 - 4445535
Alignment:
Q  124 tgtgtccataatgagatcacacaccctgtatttataatggttttacaat------attgaatgcttaatgagtaagcactagcctaggaagttgtatact 217  Q
    |||||| |||||||||||||||| | |||||||||||||| ||||||||      ||| |||||||| | |||||||||||||||||||||||| |||||    
T  4445636 tgtgtctataatgagatcacacagcttgtatttataatggctttacaataaatacattaaatgcttatttagtaagcactagcctaggaagttgaatact 4445537  T
Q  218 ct 219  Q
    ||    
T  4445536 ct 4445535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 124 - 217
Target Start/End: Original strand, 43432094 - 43432193
Alignment:
Q  124 tgtgtccataatgagatcacacaccctgtatttataatggttttacaata------ttgaatgcttaatgagtaagcactagcctaggaagttgtatact 217  Q
    |||||| |||||||||||||||||| |||||  ||||  |||||||||||      ||||||||||||| |||||||||||||||||||||||| |||||    
T  43432094 tgtgtctataatgagatcacacaccttgtatgcataactgttttacaataaattcattgaatgcttaatcagtaagcactagcctaggaagttgcatact 43432193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 124 - 219
Target Start/End: Complemental strand, 4446552 - 4446450
Alignment:
Q  124 tgtgtccataatgagatcacacaccctgtatttataatggttttacaat------attgaat-gcttaatgagtaagcactagcctaggaagttgtatac 216  Q
    |||||| |||||||||||||||| | | |||||||||||| ||||||||      ||||||| ||||| | |||||||||||||||||||||||| ||||    
T  4446552 tgtgtctataatgagatcacacagcttctatttataatggctttacaataaatacattgaatggcttatttagtaagcactagcctaggaagttgaatac 4446453  T
Q  217 tct 219  Q
    |||    
T  4446452 tct 4446450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 152 - 215
Target Start/End: Original strand, 27828359 - 27828428
Alignment:
Q  152 tatttataatggttttacaata------ttgaatgcttaatgagtaagcactagcctaggaagttgtata 215  Q
    ||||||||||||||||||||||      ||||||||||||| || |||||||||||||||||||||||||    
T  27828359 tatttataatggttttacaataaatgcattgaatgcttaataagaaagcactagcctaggaagttgtata 27828428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 179 - 219
Target Start/End: Original strand, 27827436 - 27827476
Alignment:
Q  179 tgcttaatgagtaagcactagcctaggaagttgtatactct 219  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  27827436 tgcttaataagtaagcactagcctaggaagttgtatactct 27827476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 131 - 219
Target Start/End: Original strand, 37469256 - 37469350
Alignment:
Q  131 ataatgagatcacacaccctgtatttataatggttttacaata------ttgaatgcttaatgagtaagcactagcctaggaagttgtatactct 219  Q
    |||||||||||||| ||  ||||||||||||||||||||||||      ||||||||||||| | ||||||||||||||||||||||||||||||    
T  37469256 ataatgagatcacagactttgtatttataatggttttacaataaatacattgaatgcttaattaataagcactagcctaggaagttgtatactct 37469350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 122 - 212
Target Start/End: Complemental strand, 11493948 - 11493850
Alignment:
Q  122 tatgtgtccataatgagatcacacaccctgtatttataatggttttacaat-------attgaatgc-ttaatgagtaagcactagcctaggaagttgt 212  Q
    |||||||| ||||||||| |||||||| |||||||||||||||||| ||||       ||||||||| |||||||||||||||||||||||||||||||    
T  11493948 tatgtgtctataatgagaccacacaccttgtatttataatggttttgcaataaagtgcattgaatgctttaatgagtaagcactagcctaggaagttgt 11493850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 131 - 219
Target Start/End: Complemental strand, 24201394 - 24201300
Alignment:
Q  131 ataatgagatcacacaccctgtatttataatggttttacaata------ttgaatgcttaatgagtaagcactagcctaggaagttgtatactct 219  Q
    |||||||||||||||| | |||||||||||||| |||||||||      ||||||||||| | |||||||||||||||||||||||| |||||||    
T  24201394 ataatgagatcacacagcttgtatttataatggctttacaataaatacattgaatgcttatttagtaagcactagcctaggaagttgaatactct 24201300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 131 - 219
Target Start/End: Original strand, 33896752 - 33896846
Alignment:
Q  131 ataatgagatcacacaccctgtatttataatggttttacaata------ttgaatgcttaatgagtaagcactagcctaggaagttgtatactct 219  Q
    ||||||||||| |||||| ||||||||||||||||| ||||||      ||||||||||||| |||||||||||||||| ||||| |||||||||    
T  33896752 ataatgagatcgcacaccttgtatttataatggtttaacaataaatacattgaatgcttaattagtaagcactagcctaagaagtagtatactct 33896846  T

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Target: chr2; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 124 - 219
Target Start/End: Complemental strand, 23221128 - 23221027
Alignment:
Q  124 tgtgtccataatgagatcacacaccctgtatttataatggttttacaat------attgaatgcttaatgagtaagcactagcctaggaagttgtatact 217  Q
    |||||| |||||||||||||||||| |||||||||||||||||| |  |      |||||||||||||| ||||||||||||| |||||||||| |||||    
T  23221128 tgtgtctataatgagatcacacaccttgtatttataatggttttcccgtaagtgcattgaatgcttaattagtaagcactagcataggaagttgaatact 23221029  T
Q  218 ct 219  Q
    ||    
T  23221028 ct 23221027  T

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Target: chr2; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 150 - 219
Target Start/End: Complemental strand, 17625886 - 17625811
Alignment:
Q  150 tgtatttataatggttttacaata------ttgaatgcttaatgagtaagcactagcctaggaagttgtatactct 219  Q
    ||||||||||||||||||||||||      ||||||||||||| |||||||||||||||||||||||| |||||||    
T  17625886 tgtatttataatggttttacaataagtgcattgaatgcttaattagtaagcactagcctaggaagttgaatactct 17625811  T

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Target: chr2; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 150 - 219
Target Start/End: Complemental strand, 17670273 - 17670198
Alignment:
Q  150 tgtatttataatggttttacaata------ttgaatgcttaatgagtaagcactagcctaggaagttgtatactct 219  Q
    ||||||||||||||||||||||||      ||||||||||||| |||||||||||||||||||||||| |||||||    
T  17670273 tgtatttataatggttttacaataagtgcattgaatgcttaattagtaagcactagcctaggaagttgaatactct 17670198  T

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Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 124 - 219
Target Start/End: Original strand, 14931879 - 14931980
Alignment:
Q  124 tgtgtccataatgagatcacacaccctgtatttataatggttttacaata------ttgaatgcttaatgagtaagcactagcctaggaagttgtatact 217  Q
    |||||| ||||||||||||||||   |||| || ||||||||||||||||      ||| ||| ||||||||||||||||||||||||||| ||||||||    
T  14931879 tgtgtctataatgagatcacacatgttgtacttttaatggttttacaataaatgcattgcatgtttaatgagtaagcactagcctaggaagatgtatact 14931978  T
Q  218 ct 219  Q
    ||    
T  14931979 ct 14931980  T

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Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 107 - 217
Target Start/End: Original strand, 2007065 - 2007179
Alignment:
Q  107 aaattgtgtttaaattatgtgtccataatgagatcacacaccctgtatttataatggttttacaata------ttgaatgcttaatgagtaagcactagc 200  Q
    ||||| ||| ||||||||| ||  |||||| ||||||||  | ||||||||||||||||||||||||      | ||||||||||| |||||||| ||||    
T  2007065 aaattttgtgtaaattatgggtttataatgggatcacac--cttgtatttataatggttttacaataaatacatcgaatgcttaattagtaagcattagc 2007162  T
Q  201 ctaggaagttgtatact 217  Q
    ||||||| |||||||||    
T  2007163 ctaggaaattgtatact 2007179  T

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Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 173 - 219
Target Start/End: Original strand, 25432756 - 25432802
Alignment:
Q  173 attgaatgcttaatgagtaagcactagcctaggaagttgtatactct 219  Q
    |||||||||||| | |||||||||||||||||||| |||||||||||    
T  25432756 attgaatgcttatttagtaagcactagcctaggaaattgtatactct 25432802  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 146
Target Start/End: Original strand, 13220058 - 13220086
Alignment:
Q  118 aaattatgtgtccataatgagatcacaca 146  Q
    |||||||||||||||||||||||||||||    
T  13220058 aaattatgtgtccataatgagatcacaca 13220086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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