View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11324A_low_373 (Length: 231)
Name: NF11324A_low_373
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_373 |
 | |
|
| [»] chr8 (6 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 101; Significance: 3e-50; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 20 - 231
Target Start/End: Complemental strand, 3594433 - 3594216
Alignment:
| Q |
20 |
cagttaccaccttcaaagtattannnnnnnnggacacaccatcttaaaagtatattcattaacttgtgcactaatactgnnnnnnnntg-----actatt |
114 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | || |||||| |
|
|
| T |
3594433 |
cagttaccaccttcaaagtattattttttttggacacaccatcttaaaagtatattcattaacttgtgcactaatccctttgaatcatggaaatactatt |
3594334 |
T |
|
| Q |
115 |
atttttgggggctactgtcatagctccagacatgagtccaatgtacacatactg-nnnnnnntgactttatacactttcagaaatatggagagttttctg |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
|
|
| T |
3594333 |
atttttgggggctactgtcatagctccagacatgagtcgaatgtacacatactgaaaaaaaatcactttatacactttcagaaatatggagagttttctg |
3594234 |
T |
|
| Q |
214 |
catcaagggaggggaaag |
231 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
3594233 |
catcaagggaggggaaag |
3594216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 109 - 231
Target Start/End: Complemental strand, 3580426 - 3580305
Alignment:
| Q |
109 |
actattatttttgggggctactgtcatagctccagacatgagtccaatgtacacatactgnnnnnnntgactttatacactttcagaaatatggagagtt |
208 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
3580426 |
actattattttcgggggctactgtcatagctccagacatgagtccaatgtacacatactgaaaaaa-tgactttatacactttcagaaatatggagagtt |
3580328 |
T |
|
| Q |
209 |
ttctgcatcaagggaggggaaag |
231 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
3580327 |
ttctgcatcaagggaggggaaag |
3580305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 122 - 231
Target Start/End: Complemental strand, 3571971 - 3571864
Alignment:
| Q |
122 |
ggggctactgtcatagctccagacatgagtccaatgtacacatactgnnnnnnntgactttatacactttcagaaatatggagagttttctgcatcaagg |
221 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||||||||| | | | ||| |||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
3571971 |
ggggctactgtcatagcaccagatatgagtccaatgtacacatccagaaaaa--tcactatatacactttcagaaacatggagagttttctgcatcaagg |
3571874 |
T |
|
| Q |
222 |
gaggggaaag |
231 |
Q |
| |
|
|||||||||| |
|
|
| T |
3571873 |
gaggggaaag |
3571864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 183 - 231
Target Start/End: Complemental strand, 3566906 - 3566858
Alignment:
| Q |
183 |
atacactttcagaaatatggagagttttctgcatcaagggaggggaaag |
231 |
Q |
| |
|
||||||| ||||||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
3566906 |
atacactatcagaaacatggagagttttccgcatcaagggaggggaaag |
3566858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 94
Target Start/End: Complemental strand, 3572020 - 3571978
Alignment:
| Q |
52 |
gacacaccatcttaaaagtatattcattaacttgtgcactaat |
94 |
Q |
| |
|
||||||||||||||||||||||||||| |||| ||||| |||| |
|
|
| T |
3572020 |
gacacaccatcttaaaagtatattcatcaactggtgcagtaat |
3571978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 94
Target Start/End: Complemental strand, 3580483 - 3580446
Alignment:
| Q |
57 |
accatcttaaaagtatattcattaacttgtgcactaat |
94 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
3580483 |
accatcttaaaagtatattcatcaactggtgcactaat |
3580446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University