View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324A_low_375 (Length: 231)
Name: NF11324A_low_375
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_375 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 6236580 - 6236352
Alignment:
| Q |
1 |
ttgatgtaattctgccttttctgtttttgtttcttcctgatgtagaccttgttatgggttctggccctctctagttttattgaatttcttcgcttgatcn |
100 |
Q |
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| T |
6236580 |
ttgatgtaattctgccttttctatttttgtttcttcctgatgtagactttgttatgggttctggccctcttcagttttattgaatttcttcgcttgat-- |
6236483 |
T |
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| Q |
101 |
nnnnnnnnnnnnnttagattttcacctatcacctaggttttcaatttctattaactaaagcgaaaggggaaatatggtttcgtagacttcttctactttt |
200 |
Q |
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| T |
6236482 |
aaaaaaaaaaaaattagattttcacctatcacctaggttttcaatttctattaactaaagcgaaaggggaaatatggtttcgtagacttcttctactttt |
6236383 |
T |
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| Q |
201 |
gttgaatgtgggaacactataatttagaaac |
231 |
Q |
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| T |
6236382 |
gttgaatgtgggaacactaaaatttagaaac |
6236352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 114 - 219
Target Start/End: Original strand, 33891807 - 33891908
Alignment:
| Q |
114 |
ttagattttcacctatcacctaggttttcaatttctattaactaaagcgaaaggggaaatatggtttcgtagacttcttctacttttgttgaatgtggga |
213 |
Q |
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| T |
33891807 |
ttagattttcacccataaactaggttttcaatta----taactaaagtgaaaagggaaatatggtttctaggacttcttttacttttgttgaatgtgggg |
33891902 |
T |
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| Q |
214 |
acacta |
219 |
Q |
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|||||| |
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| T |
33891903 |
acacta |
33891908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 114 - 219
Target Start/End: Complemental strand, 33952441 - 33952340
Alignment:
| Q |
114 |
ttagattttcacctatcacctaggttttcaatttctattaactaaagcgaaaggggaaatatggtttcgtagacttcttctacttttgttgaatgtggga |
213 |
Q |
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||||||||||||| || | |||||||||||||| ||||||||| |||| ||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
33952441 |
ttagattttcacccataaactaggttttcaatta----taactaaagtgaaaagggaaatatggtttctaggacttcttttacttttgttgaatgtgggg |
33952346 |
T |
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| Q |
214 |
acacta |
219 |
Q |
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|||||| |
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| T |
33952345 |
acacta |
33952340 |
T |
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