View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324A_low_377 (Length: 231)
Name: NF11324A_low_377
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_377 |
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Alignment Details
Target: chr3 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 15 - 219
Target Start/End: Complemental strand, 20165591 - 20165390
Alignment:
| Q |
15 |
ggacatcatttatatcccttctaacaagaatctgcttaagtgaatgacacttgaattgacttaaacacttatgtgtatagcaaggaactgaaccaaaatc |
114 |
Q |
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| T |
20165591 |
ggacatcatttatatcccttctaacaagaatctgcttaagtgaatgacacttgaattgacttaaacacttatgtgtatagcaaggaactgaaccaaaatc |
20165492 |
T |
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| Q |
115 |
tttatggagtaaaacaaaagcataagaaagaaaagttagacatctccacaggaattagatattattactcattgcattgatattcaatacaaataaactc |
214 |
Q |
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| T |
20165491 |
tttatggagtaaaacaaaagcataagaaaaaaaagttagacatatccacaggaattagat---attactcattgcattgatattcaatacaaataaactt |
20165395 |
T |
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| Q |
215 |
caaac |
219 |
Q |
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||||| |
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| T |
20165394 |
caaac |
20165390 |
T |
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