View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324A_low_380 (Length: 230)
Name: NF11324A_low_380
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_380 |
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Alignment Details
Target: chr2 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 37181788 - 37182005
Alignment:
| Q |
1 |
ggtcattacaggactatactgcagacttagagtcttggagaggattcaattttcagaaatgaacataatgacaatgtgaggtatttcgtagtctttatca |
100 |
Q |
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| T |
37181788 |
ggtcattacaggactatactgcagacttagagtcttggagaagattcaattttcaaaaatgaacataatgacaatgtgaggtatttcatagtttttatca |
37181887 |
T |
|
| Q |
101 |
ttaagctatttcatgaattcaattgttactacatgcgttttttaccattttacaaagataagtctggctcctcacatagtatcgctatctatcatgctca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
37181888 |
ttaagctatttcatgaattcaattgttactacatgcgttttttaccattttacaaagataagtttggctcctcacatagtatcgctatctatcatgc--- |
37181984 |
T |
|
| Q |
201 |
tgtatttactagtattgtcgtcta |
224 |
Q |
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||||||||||||||||||||| |
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| T |
37181985 |
---atttactagtattgtcgtcta |
37182005 |
T |
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