View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11324A_low_382 (Length: 230)

Name: NF11324A_low_382
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11324A_low_382
NF11324A_low_382
[»] chr2 (2 HSPs)
chr2 (12-222)||(38251601-38251811)
chr2 (12-222)||(43157731-43157941)
[»] chr1 (2 HSPs)
chr1 (12-222)||(11475155-11475365)
chr1 (12-222)||(11503195-11503405)
[»] chr3 (2 HSPs)
chr3 (183-222)||(49233771-49233810)
chr3 (183-222)||(49234342-49234381)
[»] chr8 (1 HSPs)
chr8 (184-222)||(14839257-14839295)
[»] chr7 (1 HSPs)
chr7 (184-222)||(27962395-27962433)


Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 12 - 222
Target Start/End: Complemental strand, 38251811 - 38251601
Alignment:
Q  12 gggtgttctatgcatacttcaatgctggttcaaggtaattttctgtatatctcggatcaagtttgaggtaattctctacgtagttcaaagctggttttcc 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38251811 gggtgttctatgcatacttcaatgctggttcaaggtaattttctgtatatctcggatcaagtttgaggtaattctctacgtagttcaaagctggttttcc 38251712  T
Q  112 gcctgtggactgttgtggtgctgcagctacgttgtggcatttcttccacccctaggttctgattagtatcattgtgttccagctgcaacatattggtttt 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38251711 gcctgtggactgttgtggtgctgcagctacgttgtggcatttcttccacccctaggttctgattagtatcattgtgttccagctgcaacatattggtttt 38251612  T
Q  212 gttttcttctc 222  Q
    |||||||||||    
T  38251611 gttttcttctc 38251601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 12 - 222
Target Start/End: Original strand, 43157731 - 43157941
Alignment:
Q  12 gggtgttctatgcatacttcaatgctggttcaaggtaattttctgtatatctcggatcaagtttgaggtaattctctacgtagttcaaagctggttttcc 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  43157731 gggtgttctatgcatacttcaatgctggttcaaggtaattttctgtatatctcagatcaagtttgaggtaattctctacgtagttcaaagctggttttcc 43157830  T
Q  112 gcctgtggactgttgtggtgctgcagctacgttgtggcatttcttccacccctaggttctgattagtatcattgtgttccagctgcaacatattggtttt 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43157831 gcctgtggactgttgtggtgctgcagctacgttgtggcatttcttccacccctaggttctgattagtatcattgtgttccagctgcaacatattggtttt 43157930  T
Q  212 gttttcttctc 222  Q
    |||||||||||    
T  43157931 gttttcttctc 43157941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 12 - 222
Target Start/End: Original strand, 11475155 - 11475365
Alignment:
Q  12 gggtgttctatgcatacttcaatgctggttcaaggtaattttctgtatatctcggatcaagtttgaggtaattctctacgtagttcaaagctggttttcc 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  11475155 gggtgttctatgcatacttcaatgctggttcaaggtaattttctgtatatatcggatcaagtttgaggtaattctctacgtagttcaaagctggttttcc 11475254  T
Q  112 gcctgtggactgttgtggtgctgcagctacgttgtggcatttcttccacccctaggttctgattagtatcattgtgttccagctgcaacatattggtttt 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11475255 gcctgtggactgttgtggtgctgcagctacgttgtggcatttcttccacccctaggttctgattagtatcattgtgttccagctgcaacatattggtttt 11475354  T
Q  212 gttttcttctc 222  Q
    |||||||||||    
T  11475355 gttttcttctc 11475365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 12 - 222
Target Start/End: Original strand, 11503195 - 11503405
Alignment:
Q  12 gggtgttctatgcatacttcaatgctggttcaaggtaattttctgtatatctcggatcaagtttgaggtaattctctacgtagttcaaagctggttttcc 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||    
T  11503195 gggtgttctatgcatacttcaatgctggttcaaggtaattttctgtatatatcagatcaagtttgaggtaattctctacgtagttcaaagctggttttcc 11503294  T
Q  112 gcctgtggactgttgtggtgctgcagctacgttgtggcatttcttccacccctaggttctgattagtatcattgtgttccagctgcaacatattggtttt 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11503295 gcctgtggactgttgtggtgctgcagctacgttgtggcatttcttccacccctaggttctgattagtatcattgtgttccagctgcaacatattggtttt 11503394  T
Q  212 gttttcttctc 222  Q
    |||||||||||    
T  11503395 gttttcttctc 11503405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 222
Target Start/End: Complemental strand, 49233810 - 49233771
Alignment:
Q  183 ttgtgttccagctgcaacatattggttttgttttcttctc 222  Q
    |||||||||||||||||||||||||||||  |||||||||    
T  49233810 ttgtgttccagctgcaacatattggttttaatttcttctc 49233771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 222
Target Start/End: Complemental strand, 49234381 - 49234342
Alignment:
Q  183 ttgtgttccagctgcaacatattggttttgttttcttctc 222  Q
    |||||||||||||||||||||||||||||  |||||||||    
T  49234381 ttgtgttccagctgcaacatattggttttaatttcttctc 49234342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 222
Target Start/End: Original strand, 14839257 - 14839295
Alignment:
Q  184 tgtgttccagctgcaacatattggttttgttttcttctc 222  Q
    ||||||||||||||||||||| |||||| ||||||||||    
T  14839257 tgtgttccagctgcaacatatcggttttattttcttctc 14839295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 222
Target Start/End: Complemental strand, 27962433 - 27962395
Alignment:
Q  184 tgtgttccagctgcaacatattggttttgttttcttctc 222  Q
    ||||||||||||||||||||| |||||| ||||||||||    
T  27962433 tgtgttccagctgcaacatatcggttttattttcttctc 27962395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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