View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324A_low_384 (Length: 230)
Name: NF11324A_low_384
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_384 |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 52405403 - 52405627
Alignment:
| Q |
1 |
tttgcatatttgttgaatatgtacagcggttttcaacaaggaagatgacattggaacattcaccattagagctgtggatgatccaaggacattgaataag |
100 |
Q |
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| T |
52405403 |
tttgcatatttgttgaatatgtacagcggttttcaacaaggaagatgacattggaacattcaccattagagctgtggatgatccaaggacattgaataag |
52405502 |
T |
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| Q |
101 |
attctctacataaagcccccaaagaacattatttcattcaacgagcttgtagccttgtgggagaagaagattgggaagacagtcgaaaaaacttttcttc |
200 |
Q |
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| T |
52405503 |
attctctacataaagcccccaaagaacattatttcattcaacgagcttgtagcattgtgggagaagaagattgggaagaccctcgaaaaaacttttcttc |
52405602 |
T |
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| Q |
201 |
tagaggataaacttctcaaggatat |
225 |
Q |
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| T |
52405603 |
tagaggataaacttctcaaggatat |
52405627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 11 - 225
Target Start/End: Original strand, 52407927 - 52408141
Alignment:
| Q |
11 |
tgttgaatatgtacagcggttttcaacaaggaagatgacattggaacattcaccattagagctgtggatgatccaaggacattgaataagattctctaca |
110 |
Q |
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| T |
52407927 |
tgttgaatttgtgcagctgtcttcaacaaggaagaagacattggaacctacactattaaagctgtggatgacccaaggacattgaacaaaattctttacc |
52408026 |
T |
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| Q |
111 |
taaagcccccaaagaacattatttcattcaacgagcttgtagccttgtgggagaagaagattgggaagacagtcgaaaaaacttttcttctagaggataa |
210 |
Q |
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| T |
52408027 |
tcagaccccccaagaacatttactcattcaacgatgttatcgccttgtgggagaagaaaattggaaagacccttgaaaaaatttatgtatcagaggataa |
52408126 |
T |
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| Q |
211 |
acttctcaaggatat |
225 |
Q |
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| T |
52408127 |
acttctcagggatat |
52408141 |
T |
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