View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324A_low_39 (Length: 423)
Name: NF11324A_low_39
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_39 |
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Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-118; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 145 - 403
Target Start/End: Original strand, 13759865 - 13760121
Alignment:
| Q |
145 |
tgttagatattttacctttctcattctcaaaacaaaaagtatttctttgttgcctctagtagccacctaatctttagtataactaagccacactcaagtt |
244 |
Q |
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| T |
13759865 |
tgttatatattttacctttctcattctcaaaacaaa--gtatttctttgctgcctcaaatagccacccaatccttattataactaagccacactcaagtt |
13759962 |
T |
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| Q |
245 |
cactcttccactctctcttccaaatagaatatggctcatgaagaaacaaaaccaataagatttggaatccttggttgtgcagagatagcaagaaaagttt |
344 |
Q |
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| T |
13759963 |
cactcttccactctctcttccaaaaagaatatggctcatgaagaaacaaaaccaataagatttggaatccttggttgtgcagagatagcaagaaaagttt |
13760062 |
T |
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| Q |
345 |
caagagccataaccctctcaccaaactcaaccctctacgcaattggaagccgttcatta |
403 |
Q |
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| T |
13760063 |
caagagccataaccctctcaccaaactcaaccctctacgcaattggaagccgttcatta |
13760121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 30 - 151
Target Start/End: Original strand, 13759719 - 13759840
Alignment:
| Q |
30 |
taagtgtttttagcaactaaataaatattattaaatagaatgggaaaggtacaattaaccctacaacccaaaaatactacaaggttactctacctaaaat |
129 |
Q |
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| T |
13759719 |
taagtgtttttagcaactaaataaatattattaaatagaatgggaaaggtacaattgaccctacaacccaaaaatactacaaggttactctacctaaaat |
13759818 |
T |
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| Q |
130 |
aaagggtaaaatgaatgttaga |
151 |
Q |
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| T |
13759819 |
aaagggtaaaatgaatgttaga |
13759840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 221 - 400
Target Start/End: Original strand, 13741593 - 13741772
Alignment:
| Q |
221 |
gtataactaagccacactcaagttcactcttccactctctcttccaaatagaatatggctcatgaagaaacaaaaccaataagatttggaatccttggtt |
320 |
Q |
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| T |
13741593 |
gtataaccaagcaacactcacatccactcttacactctctcttccagaaagaatatggcttttgaagaaacaaaaccaataagatttggaatacttggtt |
13741692 |
T |
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| Q |
321 |
gtgcagagatagcaagaaaagtttcaagagccataaccctctcaccaaactcaaccctctacgcaattggaagccgttca |
400 |
Q |
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| T |
13741693 |
gtgcagaaatagctagaaaagtttcaagagctataaacctttcaccaaatgcaactctctacgcaattggaagtcgttca |
13741772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 221 - 400
Target Start/End: Original strand, 13747093 - 13747272
Alignment:
| Q |
221 |
gtataactaagccacactcaagttcactcttccactctctcttccaaatagaatatggctcatgaagaaacaaaaccaataagatttggaatccttggtt |
320 |
Q |
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||||||| |||| ||||||| | ||||||| |||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||| ||||||| |
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| T |
13747093 |
gtataaccaagcaacactcacatccactcttacactctctcttccagaaagaatatggcttttgaagaaacaaaaccaataagatttggaatacttggtt |
13747192 |
T |
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| Q |
321 |
gtgcagagatagcaagaaaagtttcaagagccataaccctctcaccaaactcaaccctctacgcaattggaagccgttca |
400 |
Q |
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| T |
13747193 |
gtgcagaaatagctagaaaagtttcaagagctataaacctttcaccaaatgcaactctctacgcaattggaagtcgttca |
13747272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 221 - 403
Target Start/End: Original strand, 13731236 - 13731417
Alignment:
| Q |
221 |
gtataactaagccacactcaagttcactcttccactctctcttccaaatagaatatggctcatgaagaaacaaaaccaataagatttggaatccttggtt |
320 |
Q |
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| T |
13731236 |
gtataaccaagcaacattcaaattca-tcttacactctctcttccagaaagaatatggataatgaagaaacaaaaccaataagatttggaatccttggtt |
13731334 |
T |
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| Q |
321 |
gtgcagagatagcaagaaaagtttcaagagccataaccctctcaccaaactcaaccctctacgcaattggaagccgttcatta |
403 |
Q |
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| T |
13731335 |
gtgcagaaataactcgcaaagtttcaagagccataaacctttcaccaaaagcaactctctacgcaattgggagccgttcatta |
13731417 |
T |
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