View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11324A_low_390 (Length: 230)

Name: NF11324A_low_390
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11324A_low_390
NF11324A_low_390
[»] chr4 (13 HSPs)
chr4 (1-169)||(28115024-28115192)
chr4 (178-224)||(12605255-12605301)
chr4 (41-94)||(31840289-31840342)
chr4 (41-94)||(43801002-43801055)
chr4 (41-81)||(25477419-25477459)
chr4 (41-84)||(31936962-31937005)
chr4 (45-84)||(54701162-54701201)
chr4 (3-36)||(2630028-2630061)
chr4 (41-78)||(5933080-5933117)
chr4 (41-78)||(39196907-39196944)
chr4 (3-40)||(44324499-44324536)
chr4 (41-94)||(46729499-46729552)
chr4 (41-81)||(37624995-37625035)
[»] chr8 (11 HSPs)
chr8 (170-224)||(14851794-14851848)
chr8 (41-84)||(57057-57100)
chr8 (41-88)||(31746271-31746318)
chr8 (41-94)||(24512025-24512078)
chr8 (41-94)||(34158110-34158163)
chr8 (41-84)||(25198482-25198525)
chr8 (41-84)||(41371670-41371713)
chr8 (11-41)||(15001339-15001369)
chr8 (41-95)||(38773206-38773260)
chr8 (45-94)||(25185231-25185280)
chr8 (41-94)||(40517934-40517987)
[»] chr7 (13 HSPs)
chr7 (41-84)||(19235933-19235976)
chr7 (41-95)||(20124366-20124420)
chr7 (41-94)||(10685278-10685331)
chr7 (41-94)||(18121902-18121955)
chr7 (172-224)||(36302571-36302623)
chr7 (45-84)||(43601036-43601075)
chr7 (41-95)||(1324901-1324955)
chr7 (41-95)||(2276436-2276490)
chr7 (41-94)||(4089359-4089412)
chr7 (45-94)||(33181491-33181540)
chr7 (41-94)||(48767759-48767812)
chr7 (12-40)||(20127165-20127193)
chr7 (46-94)||(43465004-43465052)
[»] chr1 (16 HSPs)
chr1 (41-84)||(36085163-36085206)
chr1 (46-94)||(46591300-46591348)
chr1 (43-94)||(31305464-31305515)
chr1 (41-84)||(47753904-47753947)
chr1 (41-95)||(5084945-5084999)
chr1 (41-94)||(3143597-3143650)
chr1 (41-94)||(41737263-41737316)
chr1 (44-83)||(8984377-8984416)
chr1 (45-79)||(32144508-32144542)
chr1 (45-79)||(32152353-32152387)
chr1 (3-40)||(8838821-8838858)
chr1 (41-94)||(15512638-15512691)
chr1 (41-94)||(28948821-28948874)
chr1 (41-94)||(32715985-32716038)
chr1 (47-84)||(44652738-44652775)
chr1 (11-43)||(16451006-16451038)
[»] chr6 (5 HSPs)
chr6 (170-224)||(11464167-11464221)
chr6 (41-94)||(1764007-1764060)
chr6 (41-81)||(30249055-30249095)
chr6 (41-94)||(19839125-19839178)
chr6 (41-73)||(15981988-15982020)
[»] chr5 (10 HSPs)
chr5 (45-94)||(25017528-25017577)
chr5 (41-84)||(25690520-25690563)
chr5 (41-84)||(35568872-35568915)
chr5 (45-95)||(27642700-27642750)
chr5 (41-95)||(27925467-27925521)
chr5 (45-94)||(12895037-12895085)
chr5 (41-94)||(15898319-15898372)
chr5 (11-40)||(37148767-37148796)
chr5 (41-94)||(39690343-39690396)
chr5 (45-81)||(10523143-10523179)
[»] chr3 (11 HSPs)
chr3 (41-94)||(29676601-29676654)
chr3 (41-84)||(20945170-20945213)
chr3 (41-84)||(46048716-46048759)
chr3 (41-94)||(44083820-44083873)
chr3 (43-94)||(12236502-12236553)
chr3 (44-94)||(30476221-30476271)
chr3 (41-94)||(11345513-11345566)
chr3 (41-94)||(26517075-26517128)
chr3 (41-94)||(29349571-29349624)
chr3 (41-94)||(31530988-31531040)
chr3 (46-94)||(22659778-22659826)
[»] chr2 (15 HSPs)
chr2 (41-84)||(28734017-28734060)
chr2 (41-94)||(40345934-40345987)
chr2 (41-80)||(23464875-23464914)
chr2 (41-84)||(41665902-41665945)
chr2 (49-79)||(2916974-2917004)
chr2 (10-40)||(6896043-6896073)
chr2 (2-36)||(11114750-11114784)
chr2 (48-94)||(34042053-34042099)
chr2 (41-94)||(3237909-3237962)
chr2 (41-94)||(17663818-17663871)
chr2 (41-94)||(20362176-20362229)
chr2 (41-94)||(24775059-24775112)
chr2 (41-94)||(31644301-31644354)
chr2 (45-94)||(41327662-41327711)
chr2 (41-94)||(45150600-45150653)
[»] scaffold0013 (1 HSPs)
scaffold0013 (49-94)||(49338-49383)
[»] scaffold1091 (1 HSPs)
scaffold1091 (43-83)||(1782-1822)
[»] scaffold0481 (1 HSPs)
scaffold0481 (43-94)||(986-1037)
[»] scaffold0050 (1 HSPs)
scaffold0050 (10-40)||(43141-43171)


Alignment Details
Target: chr4 (Bit Score: 141; Significance: 4e-74; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 28115192 - 28115024
Alignment:
Q  1 tattatgtatagtacttactgttttgcaaaccaaacgcacttagggacaaaaataaagttaaatgagtgcttagatatagggactgagagagtaccattt 100  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||    
T  28115192 tattctgtctagtacttactgttttgcaaaccaaacgcacttagggacaaaaataaagttaaatgagtgcttagatatagagacggagggagtaccattt 28115093  T
Q  101 aaggcatttaaaaagtgcaggcactcgttagcatttatcttatttttaatagtcttaagtgtaatttta 169  Q
    |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  28115092 aaggcatttaaaaagtgccggcactcgttagcatttatcttattgttaatagtcttaagtgtaatttta 28115024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 178 - 224
Target Start/End: Complemental strand, 12605301 - 12605255
Alignment:
Q  178 gtaagggcagtggaggaaaaattagatagggctctcgctactgataa 224  Q
    ||||||||| ||||||||||||| |||||||||||||||| ||||||    
T  12605301 gtaagggcattggaggaaaaattggatagggctctcgctattgataa 12605255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 94
Target Start/End: Original strand, 31840289 - 31840342
Alignment:
Q  41 ttagggacaaaaataaagttaaatgagtgcttagatatagggactgagagagta 94  Q
    ||||||||||||||||||| |||||| |||||||| |||||||| ||| |||||    
T  31840289 ttagggacaaaaataaagtcaaatgaatgcttagaaatagggacggagtgagta 31840342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 94
Target Start/End: Original strand, 43801002 - 43801055
Alignment:
Q  41 ttagggacaaaaataaagttaaatgagtgcttagatatagggactgagagagta 94  Q
    ||||||||||||||||||| ||||| | |||||||||||||||| ||| |||||    
T  43801002 ttagggacaaaaataaagtcaaatgggggcttagatatagggacggagggagta 43801055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 81
Target Start/End: Original strand, 25477419 - 25477459
Alignment:
Q  41 ttagggacaaaaataaagttaaatgagtgcttagatatagg 81  Q
    ||||||||||||||||| | |||||||||||||||||||||    
T  25477419 ttagggacaaaaataaaatcaaatgagtgcttagatatagg 25477459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 84
Target Start/End: Complemental strand, 31937005 - 31936962
Alignment:
Q  41 ttagggacaaaaataaagttaaatgagtgcttagatatagggac 84  Q
    ||||||||||||||||||||||||   |||||||||||||||||    
T  31937005 ttagggacaaaaataaagttaaatagatgcttagatatagggac 31936962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 84
Target Start/End: Complemental strand, 54701201 - 54701162
Alignment:
Q  45 ggacaaaaataaagttaaatgagtgcttagatatagggac 84  Q
    ||||||||||||||| ||||||||||||||||||| ||||    
T  54701201 ggacaaaaataaagtcaaatgagtgcttagatataaggac 54701162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 2630028 - 2630061
Alignment:
Q  3 ttatgtatagtacttactgttttgcaaaccaaac 36  Q
    ||||||| ||||||||||||||||||||||||||    
T  2630028 ttatgtacagtacttactgttttgcaaaccaaac 2630061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 78
Target Start/End: Original strand, 5933080 - 5933117
Alignment:
Q  41 ttagggacaaaaataaagttaaatgagtgcttagatat 78  Q
    ||||||||||||||||||| |||||| |||||||||||    
T  5933080 ttagggacaaaaataaagtcaaatgaatgcttagatat 5933117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 78
Target Start/End: Complemental strand, 39196944 - 39196907
Alignment:
Q  41 ttagggacaaaaataaagttaaatgagtgcttagatat 78  Q
    ||||||||||||||||||| ||||| ||||||||||||    
T  39196944 ttagggacaaaaataaagtcaaatgggtgcttagatat 39196907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 44324499 - 44324536
Alignment:
Q  3 ttatgtatagtacttactgttttgcaaaccaaacgcac 40  Q
    |||||| |||||||||| ||||||||||||||||||||    
T  44324499 ttatgtctagtacttaccgttttgcaaaccaaacgcac 44324536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 94
Target Start/End: Original strand, 46729499 - 46729552
Alignment:
Q  41 ttagggacaaaaataaagttaaatgagtgcttagatatagggactgagagagta 94  Q
    ||||||||||||||||| | ||||| ||| |||||||||||||| ||| |||||    
T  46729499 ttagggacaaaaataaaatcaaatgggtgtttagatatagggacggagggagta 46729552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 81
Target Start/End: Complemental strand, 37625035 - 37624995
Alignment:
Q  41 ttagggacaaaaataaagttaaatgagtgcttagatatagg 81  Q
    ||||||||||||||||| | ||||||||||||| |||||||    
T  37625035 ttagggacaaaaataaaatcaaatgagtgcttaaatatagg 37624995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 170 - 224
Target Start/End: Complemental strand, 14851848 - 14851794
Alignment:
Q  170 tgggcacagtaagggcagtggaggaaaaattagatagggctctcgctactgataa 224  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  14851848 tgggcacagtaagggcagtggaggaaaaattggatagagctctcgctactgataa 14851794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 84
Target Start/End: Complemental strand, 57100 - 57057
Alignment:
Q  41 ttagggacaaaaataaagttaaatgagtgcttagatatagggac 84  Q
    ||||||||||||||||| | ||||||||||||||||||||||||    
T  57100 ttagggacaaaaataaaatcaaatgagtgcttagatatagggac 57057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 88
Target Start/End: Complemental strand, 31746318 - 31746271
Alignment:
Q  41 ttagggacaaaaataaagttaaatgagtgcttagatatagggactgag 88  Q
    ||||||||||||||||||| ||||| |||||||| |||||||||||||    
T  31746318 ttagggacaaaaataaagtcaaatgggtgcttagttatagggactgag 31746271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 94
Target Start/End: Complemental strand, 24512078 - 24512025
Alignment:
Q  41 ttagggacaaaaataaagttaaatgagtgcttagatatagggactgagagagta 94  Q
    ||||||||||||||||| | ||||||||||||||||||| |||| ||| |||||    
T  24512078 ttagggacaaaaataaaatcaaatgagtgcttagatatatggacggagggagta 24512025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 94
Target Start/End: Original strand, 34158110 - 34158163
Alignment:
Q  41 ttagggacaaaaataaagttaaatgagtgcttagatatagggactgagagagta 94  Q
    ||||||||||||||||| | ||||||||||||| ||||||| || |||||||||    
T  34158110 ttagggacaaaaataaaatcaaatgagtgcttaaatataggaacggagagagta 34158163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 84
Target Start/End: Original strand, 25198482 - 25198525
Alignment:
Q  41 ttagggacaaaaataaagttaaatgagtgcttagatatagggac 84  Q
    ||||||||||||||||||| ||||  ||||||||||||||||||    
T  25198482 ttagggacaaaaataaagtcaaataggtgcttagatatagggac 25198525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 84
Target Start/End: Complemental strand, 41371713 - 41371670
Alignment:
Q  41 ttagggacaaaaataaagttaaatgagtgcttagatatagggac 84  Q
    ||||||||||||||||||| ||||||| |||||||||| |||||    
T  41371713 ttagggacaaaaataaagtcaaatgagggcttagatatcgggac 41371670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 41
Target Start/End: Complemental strand, 15001369 - 15001339
Alignment:
Q  11 agtacttactgttttgcaaaccaaacgcact 41  Q
    |||||||||||||||||||||||||||||||    
T  15001369 agtacttactgttttgcaaaccaaacgcact 15001339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 95
Target Start/End: Complemental strand, 38773260 - 38773206
Alignment:
Q  41 ttagggacaaaaataaagttaaatgagtgcttagatatagggactgagagagtac 95  Q
    ||||||| ||||||||| | |||||||||||||||||||| ||| ||| ||||||    
T  38773260 ttagggataaaaataaaatcaaatgagtgcttagatatagtgacggagggagtac 38773206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 94
Target Start/End: Original strand, 25185231 - 25185280
Alignment:
Q  45 ggacaaaaataaagttaaatgagtgcttagatatagggactgagagagta 94  Q
    ||||||||||| | ||||||||||||||||||||| |||| ||| |||||    
T  25185231 ggacaaaaatagaattaaatgagtgcttagatataaggacagagggagta 25185280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 94
Target Start/End: Original strand, 40517934 - 40517987
Alignment:
Q  41 ttagggacaaaaataaagttaaatgagtgcttagatatagggactgagagagta 94  Q
    ||||||||||||||||||| |||||  || |||||||||||||| ||| |||||    
T  40517934 ttagggacaaaaataaagtcaaatggatgtttagatatagggacggagggagta 40517987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 41 - 84
Target Start/End: Complemental strand, 19235976 - 19235933
Alignment:
Q  41 ttagggacaaaaataaagttaaatgagtgcttagatatagggac 84  Q
    ||||||||||||||||||| ||||||||||||||||||||||||    
T  19235976 ttagggacaaaaataaagtcaaatgagtgcttagatatagggac 19235933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 41 - 95
Target Start/End: Original strand, 20124366 - 20124420
Alignment:
Q  41 ttagggacaaaaataaagttaaatgagtgcttagatatagggactgagagagtac 95  Q
    ||||||||||||||||| | ||||||||||||| |||||||||| ||| ||||||    
T  20124366 ttagggacaaaaataaaatcaaatgagtgcttaaatatagggacggagggagtac 20124420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 94
Target Start/End: Original strand, 10685278 - 10685331
Alignment:
Q  41 ttagggacaaaaataaagttaaatgagtgcttagatatagggactgagagagta 94  Q
    ||||||||||||||||| | ||||||||||||||||||| |||| ||| |||||    
T  10685278 ttagggacaaaaataaaatcaaatgagtgcttagatataaggacggagggagta 10685331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 94
Target Start/End: Complemental strand, 18121955 - 18121902
Alignment:
Q  41 ttagggacaaaaataaagttaaatgagtgcttagatatagggactgagagagta 94  Q
    ||||||||||||||||||| ||||| ||||||| |||||||||| ||| |||||    
T  18121955 ttagggacaaaaataaagtcaaatgcgtgcttacatatagggacggagggagta 18121902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 36302571 - 36302623
Alignment:
Q  172 ggcacagtaagggcagtggaggaaaaattagatagggctctcgctactgataa 224  Q
    ||||||||||||||||||||||||||| | |||||| |||| ||||| |||||    
T  36302571 ggcacagtaagggcagtggaggaaaaactggataggtctcttgctaccgataa 36302623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 84
Target Start/End: Complemental strand, 43601075 - 43601036
Alignment:
Q  45 ggacaaaaataaagttaaatgagtgcttagatatagggac 84  Q
    ||||||||||||||| ||||||||||||| ||||||||||    
T  43601075 ggacaaaaataaagtcaaatgagtgcttaaatatagggac 43601036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 95
Target Start/End: Original strand, 1324901 - 1324955
Alignment:
Q  41 ttagggacaaaaataaagttaaatgagtgcttagatatagggactgagagagtac 95  Q
    ||||||||||||||||| | ||||| | |||||||||||||||| ||| ||||||    
T  1324901 ttagggacaaaaataaaataaaatgggggcttagatatagggacagagggagtac 1324955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 95
Target Start/End: Complemental strand, 2276490 - 2276436
Alignment:
Q  41 ttagggacaaaaataaagttaaatgagtgcttagatatagggactgagagagtac 95  Q
    ||||||||||||||||| | ||||| ||||||| |||||||||| ||| ||||||    
T  2276490 ttagggacaaaaataaaatcaaatgggtgcttatatatagggacggagggagtac 2276436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 94
Target Start/End: Complemental strand, 4089412 - 4089359
Alignment:
Q  41 ttagggacaaaaataaagttaaatgagtgcttagatatagggactgagagagta 94  Q
    ||||||||||||||||| | ||||| ||| |||||||||||||| ||| |||||    
T  4089412 ttagggacaaaaataaaatcaaatgggtgtttagatatagggacggagggagta 4089359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 94
Target Start/End: Original strand, 33181491 - 33181540
Alignment:
Q  45 ggacaaaaataaagttaaatgagtgcttagatatagggactgagagagta 94  Q
    ||||||||||||||| |||||||  ||||||||||| ||| |||||||||    
T  33181491 ggacaaaaataaagtcaaatgaggacttagatatagagacggagagagta 33181540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 94
Target Start/End: Original strand, 48767759 - 48767812
Alignment:
Q  41 ttagggacaaaaataaagttaaatgagtgcttagatatagggactgagagagta 94  Q
    ||||||||||||||||| | ||||| | |||||||||||||||| ||| |||||    
T  48767759 ttagggacaaaaataaaatcaaatgggggcttagatatagggacggagggagta 48767812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 40
Target Start/End: Complemental strand, 20127193 - 20127165
Alignment:
Q  12 gtacttactgttttgcaaaccaaacgcac 40  Q
    |||||||||||||||||||||||||||||    
T  20127193 gtacttactgttttgcaaaccaaacgcac 20127165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 94
Target Start/End: Complemental strand, 43465052 - 43465004
Alignment:
Q  46 gacaaaaataaagttaaatgagtgcttagatatagggactgagagagta 94  Q
    |||||||||||||| ||||| | |||||||||||||||| ||| |||||    
T  43465052 gacaaaaataaagtcaaatgggagcttagatatagggacagagggagta 43465004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 41 - 84
Target Start/End: Original strand, 36085163 - 36085206
Alignment:
Q  41 ttagggacaaaaataaagttaaatgagtgcttagatatagggac 84  Q
    ||||||||||||||||| ||||||||||||||||||||||||||    
T  36085163 ttagggacaaaaataaaattaaatgagtgcttagatatagggac 36085206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 46 - 94
Target Start/End: Original strand, 46591300 - 46591348
Alignment:
Q  46 gacaaaaataaagttaaatgagtgcttagatatagggactgagagagta 94  Q
    |||||||||||||| |||||||||||||||||||||||| ||| |||||    
T  46591300 gacaaaaataaagtcaaatgagtgcttagatatagggacagagggagta 46591348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 94
Target Start/End: Original strand, 31305464 - 31305515
Alignment:
Q  43 agggacaaaaataaagttaaatgagtgcttagatatagggactgagagagta 94  Q
    ||||||||| ||||||| |||||||||||||||||||||||| ||| |||||    
T  31305464 agggacaaacataaagtcaaatgagtgcttagatatagggacggagggagta 31305515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 84
Target Start/End: Complemental strand, 47753947 - 47753904
Alignment:
Q  41 ttagggacaaaaataaagttaaatgagtgcttagatatagggac 84  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||    
T  47753947 ttagggacaaaaataaagtcaaatgagtgtttagatatagggac 47753904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 41 - 95
Target Start/End: Complemental strand, 5084999 - 5084945
Alignment:
Q  41 ttagggacaaaaataaagttaaatgagtgcttagatatagggactgagagagtac 95  Q
    ||||||||||||||||| | ||||| |||||||||||||||||| ||| ||||||    
T  5084999 ttagggacaaaaataaaatcaaatgggtgcttagatatagggacggagggagtac 5084945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 94
Target Start/End: Original strand, 3143597 - 3143650
Alignment:
Q  41 ttagggacaaaaataaagttaaatgagtgcttagatatagggactgagagagta 94  Q
    ||||||||||||||||| | ||||| ||||||| |||||||||| |||||||||    
T  3143597 ttagggacaaaaataaaatcaaatgggtgcttaaatatagggacggagagagta 3143650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 94
Target Start/End: Original strand, 41737263 - 41737316
Alignment:
Q  41 ttagggacaaaaataaagttaaatgagtgcttagatatagggactgagagagta 94  Q
    |||||||||||||||| ||||||||| | ||||||||||||||| ||| |||||    
T  41737263 ttagggacaaaaataacgttaaatgaatacttagatatagggacggagggagta 41737316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 83
Target Start/End: Complemental strand, 8984416 - 8984377
Alignment:
Q  44 gggacaaaaataaagttaaatgagtgcttagatataggga 83  Q
    |||||||||||||||| ||||| |||||||||||||||||    
T  8984416 gggacaaaaataaagtcaaatgggtgcttagatataggga 8984377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 79
Target Start/End: Original strand, 32144508 - 32144542
Alignment:
Q  45 ggacaaaaataaagttaaatgagtgcttagatata 79  Q
    ||||||||||||||||||||| |||||||||||||    
T  32144508 ggacaaaaataaagttaaatgtgtgcttagatata 32144542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 79
Target Start/End: Original strand, 32152353 - 32152387
Alignment:
Q  45 ggacaaaaataaagttaaatgagtgcttagatata 79  Q
    ||||||||||||||||||||| |||||||||||||    
T  32152353 ggacaaaaataaagttaaatgtgtgcttagatata 32152387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 8838858 - 8838821
Alignment:
Q  3 ttatgtatagtacttactgttttgcaaaccaaacgcac 40  Q
    |||||| ||||| |||||||||||||||||||||||||    
T  8838858 ttatgtctagtatttactgttttgcaaaccaaacgcac 8838821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 94
Target Start/End: Complemental strand, 15512691 - 15512638
Alignment:
Q  41 ttagggacaaaaataaagttaaatgagtgcttagatatagggactgagagagta 94  Q
    ||||||||||||||||| | ||||| ||||||| |||||||||| ||| |||||    
T  15512691 ttagggacaaaaataaaatcaaatgggtgcttacatatagggacggagggagta 15512638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 94
Target Start/End: Complemental strand, 28948874 - 28948821
Alignment:
Q  41 ttagggacaaaaataaagttaaatgagtgcttagatatagggactgagagagta 94  Q
    ||||||||||||||||| | ||||| ||||||| |||||||||| ||| |||||    
T  28948874 ttagggacaaaaataaaatcaaatgggtgcttacatatagggacggagggagta 28948821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 94
Target Start/End: Original strand, 32715985 - 32716038
Alignment:
Q  41 ttagggacaaaaataaagttaaatgagtgcttagatatagggactgagagagta 94  Q
    |||| |||||||||||| | ||||| |||||||||||||||||| ||| |||||    
T  32715985 ttagagacaaaaataaaatcaaatgggtgcttagatatagggacggagggagta 32716038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 84
Target Start/End: Complemental strand, 44652775 - 44652738
Alignment:
Q  47 acaaaaataaagttaaatgagtgcttagatatagggac 84  Q
    ||||||||||||||||||| | ||||||||||||||||    
T  44652775 acaaaaataaagttaaatgggggcttagatatagggac 44652738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 43
Target Start/End: Complemental strand, 16451038 - 16451006
Alignment:
Q  11 agtacttactgttttgcaaaccaaacgcactta 43  Q
    |||||||||||||||||||||||||| ||||||    
T  16451038 agtacttactgttttgcaaaccaaacacactta 16451006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 170 - 224
Target Start/End: Complemental strand, 11464221 - 11464167
Alignment:
Q  170 tgggcacagtaagggcagtggaggaaaaattagatagggctctcgctactgataa 224  Q
    |||||||| |||||| ||||||||||||| | |||||||||||||||||||||||    
T  11464221 tgggcacaataagggtagtggaggaaaaaatggatagggctctcgctactgataa 11464167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 94
Target Start/End: Original strand, 1764007 - 1764060
Alignment:
Q  41 ttagggacaaaaataaagttaaatgagtgcttagatatagggactgagagagta 94  Q
    |||| |||||||||||| | |||||||||||||||||||||||| ||| |||||    
T  1764007 ttagagacaaaaataaaatcaaatgagtgcttagatatagggacggagggagta 1764060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 81
Target Start/End: Original strand, 30249055 - 30249095
Alignment:
Q  41 ttagggacaaaaataaagttaaatgagtgcttagatatagg 81  Q
    ||||||||||||||||||| ||||| |||||||||||||||    
T  30249055 ttagggacaaaaataaagtcaaatgggtgcttagatatagg 30249095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 94
Target Start/End: Original strand, 19839125 - 19839178
Alignment:
Q  41 ttagggacaaaaataaagttaaatgagtgcttagatatagggactgagagagta 94  Q
    ||||||||||||||||| | ||||| ||||||| |||||||||| ||| |||||    
T  19839125 ttagggacaaaaataaaatcaaatgggtgcttacatatagggacggagggagta 19839178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 73
Target Start/End: Original strand, 15981988 - 15982020
Alignment:
Q  41 ttagggacaaaaataaagttaaatgagtgctta 73  Q
    ||||||||||||||||||||||||| |||||||    
T  15981988 ttagggacaaaaataaagttaaatgggtgctta 15982020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 94
Target Start/End: Complemental strand, 25017577 - 25017528
Alignment:
Q  45 ggacaaaaataaagttaaatgagtgcttagatatagggactgagagagta 94  Q
    ||||||||||||||| |||||| ||||||||||||||||| |||||||||    
T  25017577 ggacaaaaataaagtcaaatgaatgcttagatatagggacggagagagta 25017528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 84
Target Start/End: Complemental strand, 25690563 - 25690520
Alignment:
Q  41 ttagggacaaaaataaagttaaatgagtgcttagatatagggac 84  Q
    ||||||||||||||||| | ||||| ||||||||||||||||||    
T  25690563 ttagggacaaaaataaaatcaaatgggtgcttagatatagggac 25690520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 84
Target Start/End: Complemental strand, 35568915 - 35568872
Alignment:
Q  41 ttagggacaaaaataaagttaaatgagtgcttagatatagggac 84  Q
    ||||||||||||||||| |||||||  |||||||||||||||||    
T  35568915 ttagggacaaaaataaaattaaatggatgcttagatatagggac 35568872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 95
Target Start/End: Original strand, 27642700 - 27642750
Alignment:
Q  45 ggacaaaaataaagttaaatgagtgcttagatatagggactgagagagtac 95  Q
    ||||||||||||| | ||||||||||||| |||||||||| ||| ||||||    
T  27642700 ggacaaaaataaaatcaaatgagtgcttacatatagggacggagggagtac 27642750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 95
Target Start/End: Original strand, 27925467 - 27925521
Alignment:
Q  41 ttagggacaaaaataaagttaaatgagtgcttagatatagggactgagagagtac 95  Q
    ||||||||||||||||||| ||||| | ||||||||| |||||| ||| ||||||    
T  27925467 ttagggacaaaaataaagtcaaatgggggcttagatacagggacggagggagtac 27925521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 94
Target Start/End: Complemental strand, 12895085 - 12895037
Alignment:
Q  45 ggacaaaaataaagttaaatgagtgcttagatatagggactgagagagta 94  Q
    ||||||||||||| |||||||| ||||||||||||||||| ||| |||||    
T  12895085 ggacaaaaataaaattaaatga-tgcttagatatagggacggagggagta 12895037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 94
Target Start/End: Complemental strand, 15898372 - 15898319
Alignment:
Q  41 ttagggacaaaaataaagttaaatgagtgcttagatatagggactgagagagta 94  Q
    ||||||||||||||||||| ||| |  ||||||||||||||||| ||| |||||    
T  15898372 ttagggacaaaaataaagtcaaacggatgcttagatatagggacggagggagta 15898319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 40
Target Start/End: Original strand, 37148767 - 37148796
Alignment:
Q  11 agtacttactgttttgcaaaccaaacgcac 40  Q
    ||||||||||||||||||||||||||||||    
T  37148767 agtacttactgttttgcaaaccaaacgcac 37148796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 94
Target Start/End: Complemental strand, 39690396 - 39690343
Alignment:
Q  41 ttagggacaaaaataaagttaaatgagtgcttagatatagggactgagagagta 94  Q
    ||||||||||||||||| | ||||| ||||||| |||||||||| ||| |||||    
T  39690396 ttagggacaaaaataaaatcaaatgggtgcttacatatagggacggagggagta 39690343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 81
Target Start/End: Complemental strand, 10523179 - 10523143
Alignment:
Q  45 ggacaaaaataaagttaaatgagtgcttagatatagg 81  Q
    ||||||||||||||| ||||| |||||||||||||||    
T  10523179 ggacaaaaataaagtcaaatgggtgcttagatatagg 10523143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 94
Target Start/End: Complemental strand, 29676654 - 29676601
Alignment:
Q  41 ttagggacaaaaataaagttaaatgagtgcttagatatagggactgagagagta 94  Q
    ||||||||||||||||| | |||||||||||||||||||||||| ||| |||||    
T  29676654 ttagggacaaaaataaaatcaaatgagtgcttagatatagggacggagggagta 29676601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 84
Target Start/End: Complemental strand, 20945213 - 20945170
Alignment:
Q  41 ttagggacaaaaataaagttaaatgagtgcttagatatagggac 84  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||    
T  20945213 ttagggacaaaaataaagtcaaatgggtgcttagatatagggac 20945170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 84
Target Start/End: Original strand, 46048716 - 46048759
Alignment:
Q  41 ttagggacaaaaataaagttaaatgagtgcttagatatagggac 84  Q
    ||||||||||||||||| | ||||||||||||||||||||||||    
T  46048716 ttagggacaaaaataaaatcaaatgagtgcttagatatagggac 46048759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 94
Target Start/End: Original strand, 44083820 - 44083873
Alignment:
Q  41 ttagggacaaaaataaagttaaatgagtgcttagatatagggactgagagagta 94  Q
    ||||||||||||||||||| |||||  ||||||||||||||||| ||| |||||    
T  44083820 ttagggacaaaaataaagtcaaatggatgcttagatatagggacggagggagta 44083873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 94
Target Start/End: Original strand, 12236502 - 12236553
Alignment:
Q  43 agggacaaaaataaagttaaatgagtgcttagatatagggactgagagagta 94  Q
    ||||||||||||||||| ||||| ||| |||||||||||||  |||||||||    
T  12236502 agggacaaaaataaagtcaaatgggtgattagatatagggatggagagagta 12236553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 94
Target Start/End: Original strand, 30476221 - 30476271
Alignment:
Q  44 gggacaaaaataaagttaaatgagtgcttagatatagggactgagagagta 94  Q
    |||||||||||||| | ||||| |||||||||||||||||| ||| |||||    
T  30476221 gggacaaaaataaaatcaaatgggtgcttagatatagggacggagggagta 30476271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 94
Target Start/End: Original strand, 11345513 - 11345566
Alignment:
Q  41 ttagggacaaaaataaagttaaatgagtgcttagatatagggactgagagagta 94  Q
    |||||| |||||||||| | ||||| |||||||||||||||||| ||| |||||    
T  11345513 ttaggggcaaaaataaaatcaaatgggtgcttagatatagggacggagggagta 11345566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 94
Target Start/End: Complemental strand, 26517128 - 26517075
Alignment:
Q  41 ttagggacaaaaataaagttaaatgagtgcttagatatagggactgagagagta 94  Q
    ||||||||||||||||| | ||||| ||||||||||||| |||| ||| |||||    
T  26517128 ttagggacaaaaataaaatcaaatgggtgcttagatatatggacggagggagta 26517075  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 94
Target Start/End: Original strand, 29349571 - 29349624
Alignment:
Q  41 ttagggacaaaaataaagttaaatgagtgcttagatatagggactgagagagta 94  Q
    ||||| ||||||||||||| ||||||||| ||||||||||| || ||| |||||    
T  29349571 ttaggaacaaaaataaagtcaaatgagtgtttagatataggaacggagggagta 29349624  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 94
Target Start/End: Complemental strand, 31531040 - 31530988
Alignment:
Q  41 ttagggacaaaaataaagttaaatgagtgcttagatatagggactgagagagta 94  Q
    |||||||||||| |||||| ||||| |||||||||||||||||| ||| |||||    
T  31531040 ttagggacaaaa-taaagtcaaatgggtgcttagatatagggacggagggagta 31530988  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 94
Target Start/End: Original strand, 22659778 - 22659826
Alignment:
Q  46 gacaaaaataaagttaaatgagtgcttagatatagggactgagagagta 94  Q
    |||||||||||||| ||||||||  ||||||||| |||| |||||||||    
T  22659778 gacaaaaataaagtcaaatgagtatttagatataaggacggagagagta 22659826  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 84
Target Start/End: Original strand, 28734017 - 28734060
Alignment:
Q  41 ttagggacaaaaataaagttaaatgagtgcttagatatagggac 84  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||    
T  28734017 ttagggacaaaaataaagtcaaatgggtgcttagatatagggac 28734060  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 94
Target Start/End: Complemental strand, 40345987 - 40345934
Alignment:
Q  41 ttagggacaaaaataaagttaaatgagtgcttagatatagggactgagagagta 94  Q
    ||||| ||||||||||| | ||||||||| |||||||||||||| |||||||||    
T  40345987 ttaggaacaaaaataaaataaaatgagtgtttagatatagggacggagagagta 40345934  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 80
Target Start/End: Original strand, 23464875 - 23464914
Alignment:
Q  41 ttagggacaaaaataaagttaaatgagtgcttagatatag 80  Q
    ||||||||||||||||||||||||||||| ||| ||||||    
T  23464875 ttagggacaaaaataaagttaaatgagtgtttacatatag 23464914  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 84
Target Start/End: Original strand, 41665902 - 41665945
Alignment:
Q  41 ttagggacaaaaataaagttaaatgagtgcttagatatagggac 84  Q
    ||||||||||||||||||| ||||| | ||||||||||||||||    
T  41665902 ttagggacaaaaataaagtcaaatgggagcttagatatagggac 41665945  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 79
Target Start/End: Complemental strand, 2917004 - 2916974
Alignment:
Q  49 aaaaataaagttaaatgagtgcttagatata 79  Q
    |||||||||||||||||||||||||||||||    
T  2917004 aaaaataaagttaaatgagtgcttagatata 2916974  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 40
Target Start/End: Complemental strand, 6896073 - 6896043
Alignment:
Q  10 tagtacttactgttttgcaaaccaaacgcac 40  Q
    |||||||||||||||||||||||||||||||    
T  6896073 tagtacttactgttttgcaaaccaaacgcac 6896043  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 36
Target Start/End: Complemental strand, 11114784 - 11114750
Alignment:
Q  2 attatgtatagtacttactgttttgcaaaccaaac 36  Q
    ||||||| |||||||||||||||||||||||||||    
T  11114784 attatgtttagtacttactgttttgcaaaccaaac 11114750  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 94
Target Start/End: Complemental strand, 34042099 - 34042053
Alignment:
Q  48 caaaaataaagttaaatgagtgcttagatatagggactgagagagta 94  Q
    |||||||||||| ||||| |||||||||||||||||| ||| |||||    
T  34042099 caaaaataaagtcaaatgggtgcttagatatagggacggagggagta 34042053  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 94
Target Start/End: Original strand, 3237909 - 3237962
Alignment:
Q  41 ttagggacaaaaataaagttaaatgagtgcttagatatagggactgagagagta 94  Q
    ||||||||||||||||| | |||||  |||||||||||||||||  ||||||||    
T  3237909 ttagggacaaaaataaaatcaaatggatgcttagatatagggacgaagagagta 3237962  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 94
Target Start/End: Original strand, 17663818 - 17663871
Alignment:
Q  41 ttagggacaaaaataaagttaaatgagtgcttagatatagggactgagagagta 94  Q
    ||||||||||||||||| | ||||| ||||||| |||||||||| ||| |||||    
T  17663818 ttagggacaaaaataaaatcaaatgggtgcttacatatagggacggagggagta 17663871  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 94
Target Start/End: Original strand, 20362176 - 20362229
Alignment:
Q  41 ttagggacaaaaataaagttaaatgagtgcttagatatagggactgagagagta 94  Q
    ||||||||||||||||| | ||||| ||||||| |||||||||| ||| |||||    
T  20362176 ttagggacaaaaataaaatcaaatgggtgcttacatatagggacggagggagta 20362229  T

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Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 94
Target Start/End: Original strand, 24775059 - 24775112
Alignment:
Q  41 ttagggacaaaaataaagttaaatgagtgcttagatatagggactgagagagta 94  Q
    ||||||||||||||||| | |||||  |||||| |||||||||| |||||||||    
T  24775059 ttagggacaaaaataaaatcaaatggatgcttaaatatagggacggagagagta 24775112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 94
Target Start/End: Complemental strand, 31644354 - 31644301
Alignment:
Q  41 ttagggacaaaaataaagttaaatgagtgcttagatatagggactgagagagta 94  Q
    ||||||||||||||||| | ||||| ||||||||||||| |||| ||| |||||    
T  31644354 ttagggacaaaaataaaatcaaatgggtgcttagatataaggacagagtgagta 31644301  T

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Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 94
Target Start/End: Complemental strand, 41327711 - 41327662
Alignment:
Q  45 ggacaaaaataaagttaaatgagtgcttagatatagggactgagagagta 94  Q
    ||||||||||||||| ||||| ||||||||||||| |||| ||| |||||    
T  41327711 ggacaaaaataaagtcaaatgggtgcttagatatatggacggagggagta 41327662  T

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Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 94
Target Start/End: Complemental strand, 45150653 - 45150600
Alignment:
Q  41 ttagggacaaaaataaagttaaatgagtgcttagatatagggactgagagagta 94  Q
    ||||||||||||||||| | ||||||||| ||| |||||||||| ||| |||||    
T  45150653 ttagggacaaaaataaaatcaaatgagtgattaaatatagggacggagggagta 45150600  T

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Target: scaffold0013 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 94
Target Start/End: Original strand, 49338 - 49383
Alignment:
Q  49 aaaaataaagttaaatgagtgcttagatatagggactgagagagta 94  Q
    ||||||||||||||||| ||||||| ||||| ||||||||||||||    
T  49338 aaaaataaagttaaatgggtgcttaaatatatggactgagagagta 49383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1091 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold1091
Description:

Target: scaffold1091; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 83
Target Start/End: Complemental strand, 1822 - 1782
Alignment:
Q  43 agggacaaaaataaagttaaatgagtgcttagatataggga 83  Q
    ||||||||||||||||| ||||| |||||||||||||||||    
T  1822 agggacaaaaataaagtcaaatgggtgcttagatataggga 1782  T

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Target: scaffold0481 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 94
Target Start/End: Original strand, 986 - 1037
Alignment:
Q  43 agggacaaaaataaagttaaatgagtgcttagatatagggactgagagagta 94  Q
    ||||||||||||||||| ||||| | |||||||||||||||| ||| |||||    
T  986 agggacaaaaataaagtcaaatgggagcttagatatagggacggagggagta 1037  T

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Target: scaffold0050 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 40
Target Start/End: Original strand, 43141 - 43171
Alignment:
Q  10 tagtacttactgttttgcaaaccaaacgcac 40  Q
    |||||||||||||||||||||||||||||||    
T  43141 tagtacttactgttttgcaaaccaaacgcac 43171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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