View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11324A_low_398 (Length: 230)

Name: NF11324A_low_398
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11324A_low_398
NF11324A_low_398
[»] chr1 (16 HSPs)
chr1 (1-224)||(13244705-13244928)
chr1 (1-205)||(13085911-13086115)
chr1 (1-121)||(13271474-13271594)
chr1 (1-122)||(12964059-12964180)
chr1 (1-130)||(30368292-30368421)
chr1 (1-198)||(13100812-13101008)
chr1 (1-205)||(13081049-13081253)
chr1 (1-130)||(13070360-13070489)
chr1 (1-130)||(13094278-13094407)
chr1 (1-200)||(13007009-13007208)
chr1 (1-122)||(19279352-19279473)
chr1 (1-200)||(13204268-13204467)
chr1 (1-130)||(13129707-13129836)
chr1 (1-130)||(13161400-13161529)
chr1 (1-204)||(13065397-13065600)
chr1 (62-121)||(13010661-13010720)
[»] chr6 (1 HSPs)
chr6 (1-90)||(31380255-31380344)


Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 13244705 - 13244928
Alignment:
Q  1 agttcatagctttcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  13244705 agttcatagctttcaatgcaggtcctagaagttgtattgggaaagatcttagcttcgttcaaatgaaaatggttgcagcttctttgttatggaagtttcg 13244804  T
Q  101 catacaggtggtggaaggtcaccctgtaacgctgagaaattctattgcccttcgcatgaaacacggcttaaaggtcgaaatcagtaaaagatgcatttga 200  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  13244805 catacaggtggtggaaggtcaccctgtaacgctgagaacttctattgtcgttcgcatgaaacacggcttaaaggtcgaagtcagtaaaagatgcatttga 13244904  T
Q  201 tataacaaagttgcaagtgtgatg 224  Q
    ||||||||||||| ||||||||||    
T  13244905 tataacaaagttgtaagtgtgatg 13244928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 13086115 - 13085911
Alignment:
Q  1 agttcatagctttcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcg 100  Q
    |||||||||| || |||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||     
T  13086115 agttcatagcatttaatgcaggtcctcgaagttgtcttgggaaagatattagcattgttcaaatgaaaatggttgcagctgctatgttatggaagtttca 13086016  T
Q  101 catacaggtggtggaaggtcaccctgtaacgctgagaaattctattgcccttcgcatgaaacacggcttaaaggtcgaaatcagtaaaagatgcatttga 200  Q
    |||||| || |||||||||||  ||||||| |  |||  ||||||||  || |||||| |||| || || || ||| || | ||||||||||| ||||||    
T  13086015 catacaagttgtggaaggtcattctgtaactccaagagtttctattgttctccgcatggaacatggattcaaagtcaaagttagtaaaagatgaatttga 13085916  T
Q  201 tataa 205  Q
    |||||    
T  13085915 tataa 13085911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 13271594 - 13271474
Alignment:
Q  1 agttcatagctttcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcg 100  Q
    |||||||||| |||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||     
T  13271594 agttcatagcattcaatgcaggtcctagaagctgtcttgggaaagatattagctttattcaaatgaaaatggttgcagcttctgtattatggaagtttca 13271495  T
Q  101 catacaggtggtggaaggtca 121  Q
    |||||| ||||||||||||||    
T  13271494 catacatgtggtggaaggtca 13271474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 12964059 - 12964180
Alignment:
Q  1 agttcatagctttcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcg 100  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  | |||| ||||||||||     
T  12964059 agttcatagcattcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgctgctaatgtgttgtggaagtttca 12964158  T
Q  101 catacaggtggtggaaggtcac 122  Q
    |||| | |||||||||||||||    
T  12964159 catagaagtggtggaaggtcac 12964180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 30368292 - 30368421
Alignment:
Q  1 agttcatagctttcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcg 100  Q
    ||||||||||||||||| |||| |||||||||||||| || |||||| |||| || ||||||||||| |||||||||||| | ||||||||||||||||     
T  30368292 agttcatagctttcaatacaggacctagaagttgtatgggtaaagatcttagtttcgttcaaatgaagatggttgcagctgccttgttatggaagtttca 30368391  T
Q  101 catacaggtggtggaaggtcaccctgtaac 130  Q
    ||||||||| ||||||||||||||||||||    
T  30368392 catacaggtcgtggaaggtcaccctgtaac 30368421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 13101008 - 13100812
Alignment:
Q  1 agttcatagctttcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcg 100  Q
    ||||||||||||||||| |||| |||||||||||||| || || |||||||||||  |||||||||| ||||| |||||| ||||||||  ||||||||     
T  13101008 agttcatagctttcaat-caggacctagaagttgtatgggtaaggatattagcttcattcaaatgaagatggtcgcagctgctttgttaccgaagtttca 13100910  T
Q  101 catacaggtggtggaaggtcaccctgtaacgctgagaaattctattgcccttcgcatgaaacacggcttaaaggtcgaaatcagtaaaagatgcattt 198  Q
    ||||||||||||||||||||||||| |||| | ||    |||| |||  |||| ||||||||| ||||| |||||| || ||| ||||||||||||||    
T  13100909 catacaggtggtggaaggtcaccctataaccccgaagctttcttttgttcttcacatgaaacatggcttgaaggtcaaagtcactaaaagatgcattt 13100812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 13081049 - 13081253
Alignment:
Q  1 agttcatagctttcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcg 100  Q
    |||||||||| || ||||||||||| ||||| ||| |||||||||||||||| ||| ||||||||||||||||||||||| |  | ||||  |||||||     
T  13081049 agttcatagcgtttaatgcaggtccaagaagctgtcttgggaaagatattagttttcttcaaatgaaaatggttgcagctgcagttttatttaagtttca 13081148  T
Q  101 catacaggtggtggaaggtcaccctgtaacgctgagaaattctattgcccttcgcatgaaacacggcttaaaggtcgaaatcagtaaaagatgcatttga 200  Q
    ||| |||||||||||||||||| |  |||  |  ||   |||||||  |||||||||| |||| ||||| |||||| ||||  |||||||||||||||||    
T  13081149 cattcaggtggtggaaggtcactcaataattcctagggtttctattctccttcgcatggaacatggctttaaggtcaaaattcgtaaaagatgcatttga 13081248  T
Q  201 tataa 205  Q
    |||||    
T  13081249 tataa 13081253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 13070360 - 13070489
Alignment:
Q  1 agttcatagctttcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcg 100  Q
    ||||||||||||||||| ||||||| ||||||||| | || |||||| |||| ||  |||||||||| ||||| |||||| ||||||||  ||||||||     
T  13070360 agttcatagctttcaatacaggtccgagaagttgtttgggtaaagatcttagtttcattcaaatgaagatggtcgcagctgctttgttacagaagtttca 13070459  T
Q  101 catacaggtggtggaaggtcaccctgtaac 130  Q
    ||||||||||||||||||||||||||||||    
T  13070460 catacaggtggtggaaggtcaccctgtaac 13070489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 13094407 - 13094278
Alignment:
Q  1 agttcatagctttcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcg 100  Q
    ||||||||||||||||  |||| || |||| |||||| || ||||||||||| ||  |||||||||| ||||| |||||| |||||||| |||||||||     
T  13094407 agttcatagctttcaacacaggacccagaatttgtataggtaaagatattagtttcattcaaatgaagatggtcgcagctgctttgttacggaagtttca 13094308  T
Q  101 catacaggtggtggaaggtcaccctgtaac 130  Q
    ||||||||||||||||||||||||||||||    
T  13094307 catacaggtggtggaaggtcaccctgtaac 13094278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 13007208 - 13007009
Alignment:
Q  1 agttcatagctttcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcg 100  Q
    ||||||||||||||||| ||||||||||||||||||| || || |||||||||||  |||||||||| ||||| |||||  ||||||||   |||||||     
T  13007208 agttcatagctttcaatacaggtcctagaagttgtatgggcaaggatattagcttcattcaaatgaagatggtcgcagcagctttgttaccaaagtttca 13007109  T
Q  101 catacaggtggtggaaggtcaccctgtaacgctgagaaattctattgcccttcgcatgaaacacggcttaaaggtcgaaatcagtaaaagatgcatttga 200  Q
    |||| ||||||||| |||||||||| |||| | ||    |||| |||  |||| ||||||||| ||||| |||||  || ||| ||||||||||||||||    
T  13007108 cataaaggtggtggcaggtcaccctataaccccgaagctttcttttgttcttcacatgaaacatggcttgaaggttaaagtcactaaaagatgcatttga 13007009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 19279352 - 19279473
Alignment:
Q  1 agttcatagctttcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcg 100  Q
    |||||||||| || ||||||||||| ||||| ||| | || ||||||||||  ||  ||||||||||||||||||||||| || | ||||||||||||||    
T  19279352 agttcatagcgtttaatgcaggtccgagaagctgtctcggaaaagatattactttccttcaaatgaaaatggttgcagctgctgtattatggaagtttcg 19279451  T
Q  101 catacaggtggtggaaggtcac 122  Q
    ||||||||| ||||||||||||    
T  19279452 catacaggtcgtggaaggtcac 19279473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 13204467 - 13204268
Alignment:
Q  1 agttcatagctttcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcg 100  Q
    ||||||||||||||||| ||||||||||||||||| | || |||||| |||| ||  |||||||||| ||||| |||||| ||||||||  ||| ||||     
T  13204467 agttcatagctttcaatacaggtcctagaagttgtttgggtaaagatcttagtttcattcaaatgaagatggtcgcagctgctttgttacagaattttca 13204368  T
Q  101 catacaggtggtggaaggtcaccctgtaacgctgagaaattctattgcccttcgcatgaaacacggcttaaaggtcgaaatcagtaaaagatgcatttga 200  Q
    |||| || | |||||||||||||||||||| |  |  | |||| |||  |||| ||||||| | || ||||||||  || ||| ||||||||||||||||    
T  13204367 cataaagatagtggaaggtcaccctgtaaccccaaagatttcttttgttcttcacatgaaatatggtttaaaggttaaagtcactaaaagatgcatttga 13204268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 13129836 - 13129707
Alignment:
Q  1 agttcatagctttcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcg 100  Q
    ||||| ||||||||||  |||| || |||| |||||| || |||||| |||| ||  |||||||||| ||||| |||||| ||||||||  ||||||||     
T  13129836 agttcgtagctttcaacacaggacccagaatttgtataggtaaagatcttagtttcattcaaatgaagatggtcgcagctgctttgttacagaagtttca 13129737  T
Q  101 catacaggtggtggaaggtcaccctgtaac 130  Q
    ||||||||||||||||||||||||||||||    
T  13129736 catacaggtggtggaaggtcaccctgtaac 13129707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 13161529 - 13161400
Alignment:
Q  1 agttcatagctttcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcg 100  Q
    |||||||| |||||||  |||| || |||| |||||| || |||||| |||| ||  |||||||||| ||||| |||||| |||||||| |||||||||     
T  13161529 agttcatatctttcaacacaggacccagaatttgtataggtaaagatcttagtttcattcaaatgaagatggtcgcagctgctttgttacggaagtttca 13161430  T
Q  101 catacaggtggtggaaggtcaccctgtaac 130  Q
    ||||||||||||||||||||||| ||||||    
T  13161429 catacaggtggtggaaggtcaccttgtaac 13161400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 13065397 - 13065600
Alignment:
Q  1 agttcatagctttcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcg 100  Q
    |||||||||||||||||||||| || ||||||||| | || |||||||| | ||| ||| ||||||| |||| ||| ||  || |  ||||||||||| |    
T  13065397 agttcatagctttcaatgcagggccaagaagttgtttgggtaaagatatcaccttcgttgaaatgaagatggctgccgcggctatactatggaagttttg 13065496  T
Q  101 catacaggtggtggaaggtcaccctgtaacgctgagaaattctattgcccttcgcatgaaacacggcttaaaggtcgaaatcagtaaaagatgcatttga 200  Q
    ||||||  | ||||| ||||| |||||||| |  ||   ||||||| ||||  | |||||||| ||||| ||||||  | ||| ||||||||||||||||    
T  13065497 catacatttagtggatggtcatcctgtaactccaaggctttctattaccctcggaatgaaacatggcttgaaggtcatagtcactaaaagatgcatttga 13065596  T
Q  201 tata 204  Q
    ||||    
T  13065597 tata 13065600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 121
Target Start/End: Complemental strand, 13010720 - 13010661
Alignment:
Q  62 aatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaaggtca 121  Q
    |||||| ||||| ||||||  |||||||||||| ||||||||||| ||||||||||||||    
T  13010720 aatgaagatggtcgcagctgatttgttatggaaatttcgcatacaagtggtggaaggtca 13010661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 31380255 - 31380344
Alignment:
Q  1 agttcatagctttcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttat 90  Q
    |||||||| |||||||| |||| ||  ||||||||||||| |||||| |||| ||  ||||||| || |||  ||| |||||||||||||    
T  31380255 agttcatatctttcaatacaggacccggaagttgtattggtaaagatcttagtttcattcaaattaagatgtctgcggcttctttgttat 31380344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University