View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324A_low_4 (Length: 559)
Name: NF11324A_low_4
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_4 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 513; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 24 - 559
Target Start/End: Original strand, 42601595 - 42602131
Alignment:
| Q |
24 |
attttgtcacaatgtatcaaattagtttctcacattatgtacatttcaaaatgattcattaaattgcaattaaattcacccatccgtttaacattaagtt |
123 |
Q |
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| T |
42601595 |
attttgtcacattgtatcaaattagtttctcacattatgtacatttcaaaatgattcattaaattgcaattaaattcacccatccgtttaacattaagtt |
42601694 |
T |
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| Q |
124 |
ggtaatttctgagatgtatct-aaattattatgtaaacgagatgcatttgatagcaaaataaaaagttgttgctgtttttcactcaaacttccaatccaa |
222 |
Q |
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| T |
42601695 |
ggtaatttctgagatgtatttgaaattattatgtaaacgagatgcatttgatagcaaaataaaaagatgttgctgtttttcactcaaactcccaatccaa |
42601794 |
T |
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| Q |
223 |
acccttccaagtttctgtatttctctcagctttggtggacctaatttccttggctcacattcacctctccaaaacatctaagcaaccagatcaatgcatc |
322 |
Q |
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| T |
42601795 |
acccttccaagtttctgtatttctctcagctttggtggacctaatttccttggctcacattcacctctccaaaacatctaagcaaccagatcaatgcatc |
42601894 |
T |
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| Q |
323 |
cacatggcacaaagagagccacaatatcactacaaaatataagcttgggaatccacatactaattcaccaccaataagatgttgctgacttgtgcatatc |
422 |
Q |
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| T |
42601895 |
cacatggcacaaagagagccacaatatcactacaaaatataagcttgggaatccacatactaattcaccaccaataagatgttgctgacttgtgcatatc |
42601994 |
T |
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| Q |
423 |
ctaatctacaatatcttatgatttccaccgtggccactcccaacacttctataaacctttgtatcctttcttcattcttcacaacaacactagcttatac |
522 |
Q |
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| T |
42601995 |
ctaatctacaatatcttatgatttccaccgtggccactcccaacacttctataaacctttgtatcctttcttcattcttcacaacaacactagcttatac |
42602094 |
T |
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| Q |
523 |
cactaaagagaacaaacatcaagaaacctcaacgccc |
559 |
Q |
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| T |
42602095 |
cactaaagagaacaaacatcaagaaacctcaacgccc |
42602131 |
T |
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