View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324A_low_401 (Length: 230)
Name: NF11324A_low_401
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_401 |
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| [»] scaffold0245 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 1313650 - 1313426
Alignment:
| Q |
1 |
acatgattggttcaggagagtttgtctgttagcacttcaaaagaaacacaggatagttctgcttctacaaggttgaaaaagaaggaggtaaactcttgcc |
100 |
Q |
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| T |
1313650 |
acatgatttgttcaggagagttcgtccgttagcacttcaaaagaaacacaggatagttctgcttctacaaggttgaaaaagaaggaggtaaactcttgcc |
1313551 |
T |
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| Q |
101 |
aggttgatctggagaagccgctagggaaatttacgggaaaaccattgtatccacccgtgggaaagtctgtggtggttgtggagtctgttacgaaggcaaa |
200 |
Q |
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| T |
1313550 |
aggttgatctggagaagcagctagggaaatttacgggaaaaccattgtatccacccgtgggaaagtctgtgatggttgtggagtctgttacgaaggcaaa |
1313451 |
T |
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| Q |
201 |
ggttattcagagataccttggtgat |
225 |
Q |
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| T |
1313450 |
ggttattcagagataccttggtgat |
1313426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 1294639 - 1294415
Alignment:
| Q |
1 |
acatgattggttcaggagagtttgtctgttagcacttcaaaagaaacacaggatagttctgcttctacaaggttgaaaaagaaggaggtaaactcttgcc |
100 |
Q |
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||||| || ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |
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| T |
1294639 |
acatggtttgttcaggagagttcgtccattagcacttcaaaagaaacacaggatagttctgcttctactaggtcgaaaaagaaggaggtaaactcttgcc |
1294540 |
T |
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| Q |
101 |
aggttgatctggagaagccgctagggaaatttacgggaaaaccattgtatccacccgtgggaaagtctgtggtggttgtggagtctgttacgaaggcaaa |
200 |
Q |
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| T |
1294539 |
aggttgatctggagaagccactagggaattttacgggaaaaccattgtatccacccgtgggaaagtctgtgatggttgtggagtctgttacgaaggcgaa |
1294440 |
T |
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| Q |
201 |
ggttattcagagataccttggtgat |
225 |
Q |
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| T |
1294439 |
ggttattcagagataccttggtgat |
1294415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0245 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: scaffold0245
Description:
Target: scaffold0245; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 22549 - 22325
Alignment:
| Q |
1 |
acatgattggttcaggagagtttgtctgttagcacttcaaaagaaacacaggatagttctgcttctacaaggttgaaaaagaaggaggtaaactcttgcc |
100 |
Q |
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||||| || ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |
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| T |
22549 |
acatggtttgttcaggagagttcgtccattagcacttcaaaagaaacacaggatagttctgcttctactaggtcgaaaaagaaggaggtaaactcttgcc |
22450 |
T |
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| Q |
101 |
aggttgatctggagaagccgctagggaaatttacgggaaaaccattgtatccacccgtgggaaagtctgtggtggttgtggagtctgttacgaaggcaaa |
200 |
Q |
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| T |
22449 |
aggttgatctggagaagccactagggaattttacgggaaaaccattgtatccacccgtgggaaagtctgtgatggttgtggagtctgttacgaaggcaaa |
22350 |
T |
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| Q |
201 |
ggttattcagagataccttggtgat |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
22349 |
ggttattcagagataccttggtgat |
22325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 129 - 186
Target Start/End: Complemental strand, 27946993 - 27946936
Alignment:
| Q |
129 |
atttacgggaaaaccattgtatccacccgtgggaaagtctgtggtggttgtggagtct |
186 |
Q |
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| T |
27946993 |
atttacgggaaaatcactttatccaccggtgggaaaatctgtggtggttgtggagtct |
27946936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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