View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324A_low_405 (Length: 230)
Name: NF11324A_low_405
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_405 |
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Alignment Details
Target: chr5 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 55 - 224
Target Start/End: Original strand, 1791032 - 1791200
Alignment:
| Q |
55 |
aaaatataaagaatatttagacaatgtcgttcacatgcagaatnnnnnnncttaacaagctttaccaaaattcacatgccaaccaaacatgacttttgcc |
154 |
Q |
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| T |
1791032 |
aaaatataaagaatatttagacaatgtcgttcacatgcagaataaaaaa-cttaacaaactttaccaaaattcacatgccaaccaaacatgacttttgcc |
1791130 |
T |
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| Q |
155 |
tcaagctaacgctaattttgaagcgccaaaaacaatccacgtgaacgtaaaattttagggctgcgttaga |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1791131 |
tcaagctaacgctaattttgaagcgccaaaaacaatccacgtgaacgtaaaattttagggctgcgttaga |
1791200 |
T |
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