View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324A_low_407 (Length: 230)
Name: NF11324A_low_407
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_407 |
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Alignment Details
Target: chr5 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 7 - 160
Target Start/End: Original strand, 43232257 - 43232410
Alignment:
| Q |
7 |
catctttattttccttctttactacaacttcttcagaggtaaggtttgtttcatttattttcacccttgttttcttgtatacataccgtttatttataag |
106 |
Q |
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| T |
43232257 |
catctttattttccttctttactacaacttcttcagaggtaaggtttgtttcatttattttcacccttgttttgttgtatacataccctttatttataag |
43232356 |
T |
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| Q |
107 |
tttgtgttatgtttttatttctcctttttccttcttaaagctgcagtcttataa |
160 |
Q |
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| T |
43232357 |
tttgtgttatgtttttatttctcttttttccttcttaaagctgcagtcttataa |
43232410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 182 - 230
Target Start/End: Original strand, 43233060 - 43233108
Alignment:
| Q |
182 |
agtttttcatattcttgagcttgaatctcattgttaaattactctgaga |
230 |
Q |
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| T |
43233060 |
agtttttcatattcttgagcttgaatctcattgttaaattactccgaga |
43233108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 156
Target Start/End: Original strand, 29362170 - 29362302
Alignment:
| Q |
20 |
cttctttactacaacttcttcagaggtaaggtttgtttcatttattttcacccttgttttcttgtatacataccgtttatttataagtttgtgttatgtt |
119 |
Q |
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| T |
29362170 |
cttctttacttcaacattttcttaggtgagttttgtttcatttaacttcatccttgtttt----tatgcataccctttatttataactttgtgttttctt |
29362265 |
T |
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| Q |
120 |
tttatttctcctttttccttcttaaagctgcagtctt |
156 |
Q |
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| T |
29362266 |
tattcttctcttttttccttctgaaagttgcaatctt |
29362302 |
T |
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