View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11324A_low_409 (Length: 229)

Name: NF11324A_low_409
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11324A_low_409
NF11324A_low_409
[»] chr5 (3 HSPs)
chr5 (1-202)||(6844607-6844808)
chr5 (5-80)||(14285161-14285236)
chr5 (5-80)||(30109309-30109384)
[»] chr7 (5 HSPs)
chr7 (2-81)||(48771937-48772016)
chr7 (5-81)||(24513796-24513872)
chr7 (5-55)||(4130949-4130999)
chr7 (5-82)||(22760861-22760938)
chr7 (5-37)||(49050492-49050524)
[»] chr2 (4 HSPs)
chr2 (1-76)||(3001383-3001458)
chr2 (5-81)||(40416391-40416467)
chr2 (5-80)||(39714992-39715067)
chr2 (5-42)||(21213807-21213844)
[»] chr1 (5 HSPs)
chr1 (5-82)||(16893392-16893469)
chr1 (5-81)||(9117118-9117194)
chr1 (5-80)||(51814494-51814569)
chr1 (5-78)||(33700774-33700847)
chr1 (5-70)||(42983375-42983440)
[»] chr6 (1 HSPs)
chr6 (5-80)||(12234508-12234583)
[»] chr4 (4 HSPs)
chr4 (1-80)||(21660141-21660220)
chr4 (1-80)||(21668905-21668984)
chr4 (8-80)||(24827825-24827897)
chr4 (5-81)||(47044716-47044792)
[»] chr3 (4 HSPs)
chr3 (5-80)||(10499110-10499185)
chr3 (5-80)||(37788466-37788541)
chr3 (1-70)||(2667872-2667941)
chr3 (5-70)||(12761522-12761587)
[»] scaffold0044 (1 HSPs)
scaffold0044 (5-55)||(92972-93022)


Alignment Details
Target: chr5 (Bit Score: 146; Significance: 5e-77; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 6844808 - 6844607
Alignment:
Q  1 agataatcgaacctgagacctcaaggaggaatacacttccagatttcaagtcaattccaccgggccaacctaagtgggttaaagagaaattatatttcta 100  Q
    |||||||||||||| ||||||| |||||||| ||||| ||| ||| ||||||||| ||||| |||||||| ||||||||||||| ||||| |||||||||    
T  6844808 agataatcgaaccttagacctcgaggaggaacacactcccaaattccaagtcaataccacctggccaacccaagtgggttaaagggaaatgatatttcta 6844709  T
Q  101 gcaagaaatatcctcacgaattcatagaaaaatgtttttatcgtccaataacccatgtattccggcccagagccaccgtgattccattttcttctattat 200  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  6844708 gcaagaaatatcctcgcgaattcatagaaaaatgtttttattgtccaataacccatgtattccggcccagagccaccgtaattccattttcttctattat 6844609  T
Q  201 aa 202  Q
    ||    
T  6844608 aa 6844607  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 80
Target Start/End: Complemental strand, 14285236 - 14285161
Alignment:
Q  5 aatcgaacctgagacctcaaggaggaatacacttccagatttcaagtcaattccaccgggccaacctaagtgggtt 80  Q
    |||||||||||||||||  |||||||  ||||| |||| || |||| |||||||||  |||||||| |||||||||    
T  14285236 aatcgaacctgagaccttgaggaggagcacactcccaggttccaagccaattccactcggccaacccaagtgggtt 14285161  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 80
Target Start/End: Original strand, 30109309 - 30109384
Alignment:
Q  5 aatcgaacctgagacctcaaggaggaatacacttccagatttcaagtcaattccaccgggccaacctaagtgggtt 80  Q
    ||||||||||||||||||||||||||  ||||| |||| |  |||| |||| |||||  ||||||| |||||||||    
T  30109309 aatcgaacctgagacctcaaggaggagcacactcccaggtcacaagccaataccaccaagccaacccaagtgggtt 30109384  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 2 - 81
Target Start/End: Complemental strand, 48772016 - 48771937
Alignment:
Q  2 gataatcgaacctgagacctcaaggaggaatacacttccagatttcaagtcaattccaccgggccaacctaagtgggtta 81  Q
    |||||||||||||||||||||||||||||  ||||| ||||||  |||| |||| |||||  ||||||| ||||||||||    
T  48772016 gataatcgaacctgagacctcaaggaggagcacactcccagatcccaagccaataccaccaagccaacccaagtgggtta 48771937  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 81
Target Start/End: Complemental strand, 24513872 - 24513796
Alignment:
Q  5 aatcgaacctgagacctcaaggaggaatacacttccagatttcaagtcaattccaccgggccaacctaagtgggtta 81  Q
    |||||||||||||||||||||||| | |||||| ||| || ||||| |||| ||||  |||||||| ||||||||||    
T  24513872 aatcgaacctgagacctcaaggagaagtacactcccaaatctcaagccaataccactaggccaacccaagtgggtta 24513796  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 55
Target Start/End: Complemental strand, 4130999 - 4130949
Alignment:
Q  5 aatcgaacctgagacctcaaggaggaatacacttccagatttcaagtcaat 55  Q
    |||||| |||||||  | |||||||||||||||||||||| ||||||||||    
T  4130999 aatcgaccctgagattttaaggaggaatacacttccagatctcaagtcaat 4130949  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 82
Target Start/End: Complemental strand, 22760938 - 22760861
Alignment:
Q  5 aatcgaacctgagacctcaaggaggaatacacttccagatttcaagtcaattccaccgggccaacctaagtgggttaa 82  Q
    |||||||||||||||||  |||||||  ||||| |||| |  ||||||||| ||||| | |||||| |||||||||||    
T  22760938 aatcgaacctgagaccttgaggaggagcacactcccaggtcccaagtcaataccaccagaccaacccaagtgggttaa 22760861  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 37
Target Start/End: Original strand, 49050492 - 49050524
Alignment:
Q  5 aatcgaacctgagacctcaaggaggaatacact 37  Q
    |||||||||||||||||||||||||| ||||||    
T  49050492 aatcgaacctgagacctcaaggaggagtacact 49050524  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 3001458 - 3001383
Alignment:
Q  1 agataatcgaacctgagacctcaaggaggaatacacttccagatttcaagtcaattccaccgggccaacctaagtg 76  Q
    |||||||||||||||||| |||||||||||  ||||| | |||| |||||||||| ||||  |||||||| |||||    
T  3001458 agataatcgaacctgagatctcaaggaggagcacactcctagatctcaagtcaataccactaggccaacccaagtg 3001383  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 81
Target Start/End: Original strand, 40416391 - 40416467
Alignment:
Q  5 aatcgaacctgagacctcaaggaggaatacacttccagatttcaagtcaattccaccgggccaacctaagtgggtta 81  Q
    ||||||||||||||||| ||||||||  | ||| |||| || ||||||||| ||||  |||||||| ||||||||||    
T  40416391 aatcgaacctgagaccttaaggaggagcatactcccaggttccaagtcaataccactaggccaacccaagtgggtta 40416467  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 80
Target Start/End: Complemental strand, 39715067 - 39714992
Alignment:
Q  5 aatcgaacctgagacctcaaggaggaatacacttccagatttcaagtcaattccaccgggccaacctaagtgggtt 80  Q
    |||||||||||||||||| |||||||  ||||| |||| |  ||||||||| |||||  ||||||| |||||||||    
T  39715067 aatcgaacctgagacctcgaggaggagcacactcccaggtcccaagtcaataccaccatgccaacccaagtgggtt 39714992  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 21213844 - 21213807
Alignment:
Q  5 aatcgaacctgagacctcaaggaggaatacacttccag 42  Q
    ||||||||||||||||||||||||||| ||||| ||||    
T  21213844 aatcgaacctgagacctcaaggaggaacacactcccag 21213807  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 82
Target Start/End: Complemental strand, 16893469 - 16893392
Alignment:
Q  5 aatcgaacctgagacctcaaggaggaatacacttccagatttcaagtcaattccaccgggccaacctaagtgggttaa 82  Q
    |||||||||||||||||| ||||||| |||||| ||| || ||||| |||| ||| | || ||||| |||||||||||    
T  16893469 aatcgaacctgagacctcgaggaggagtacactcccaaatctcaagccaataccaacaggtcaacccaagtgggttaa 16893392  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 81
Target Start/End: Complemental strand, 9117194 - 9117118
Alignment:
Q  5 aatcgaacctgagacctcaaggaggaatacacttccagatttcaagtcaattccaccgggccaacctaagtgggtta 81  Q
    ||||||||||||||||||||||||||  ||||||||||||  |||| | || ||| | |||||||| || |||||||    
T  9117194 aatcgaacctgagacctcaaggaggagcacacttccagatcccaagcccataccaaccggccaacccaaatgggtta 9117118  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 80
Target Start/End: Complemental strand, 51814569 - 51814494
Alignment:
Q  5 aatcgaacctgagacctcaaggaggaatacacttccagatttcaagtcaattccaccgggccaacctaagtgggtt 80  Q
    |||||||||||||||||  |||||||  |||||  ||||| |||||||||| ||| | |||||||| |||||||||    
T  51814569 aatcgaacctgagaccttgaggaggagcacactctcagatctcaagtcaataccatcaggccaacccaagtgggtt 51814494  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 78
Target Start/End: Original strand, 33700774 - 33700847
Alignment:
Q  5 aatcgaacctgagacctcaaggaggaatacacttccagatttcaagtcaattccaccgggccaacctaagtggg 78  Q
    |||||||||||||||||  |||||||  ||||| ||||||| |||| |||| ||||  |||||||| |||||||    
T  33700774 aatcgaacctgagaccttgaggaggagcacactcccagattccaagccaataccactaggccaacccaagtggg 33700847  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 70
Target Start/End: Original strand, 42983375 - 42983440
Alignment:
Q  5 aatcgaacctgagacctcaaggaggaatacacttccagatttcaagtcaattccaccgggccaacc 70  Q
    ||||||||||  ||||||||||||||  ||||| |||||| |||||||||| |||||  |||||||    
T  42983375 aatcgaacctcggacctcaaggaggaccacactcccagatctcaagtcaataccaccatgccaacc 42983440  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 80
Target Start/End: Original strand, 12234508 - 12234583
Alignment:
Q  5 aatcgaacctgagacctcaaggaggaatacacttccagatttcaagtcaattccaccgggccaacctaagtgggtt 80  Q
    |||||||||||||||||| ||  |||  ||||| |||| |  ||||||||| ||||| ||||||||||||||||||    
T  12234508 aatcgaacctgagacctcgagagggagcacactcccaggtcccaagtcaataccaccaggccaacctaagtgggtt 12234583  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 21660141 - 21660220
Alignment:
Q  1 agataatcgaacctgagacctcaaggaggaatacacttccagatttcaagtcaattccaccgggccaacctaagtgggtt 80  Q
    |||||||||||| ||||||||| |||| ||  ||||| |||||| |||||||||| ||||| | |||||| |||| ||||    
T  21660141 agataatcgaacttgagacctcgaggaagagcacactcccagatctcaagtcaataccaccagaccaacccaagttggtt 21660220  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 21668905 - 21668984
Alignment:
Q  1 agataatcgaacctgagacctcaaggaggaatacacttccagatttcaagtcaattccaccgggccaacctaagtgggtt 80  Q
    |||||||||||| ||||||||| |||| ||  ||||| |||||| |||||||||| ||||| | |||||| |||| ||||    
T  21668905 agataatcgaacttgagacctcgaggaagagcacactcccagatctcaagtcaataccaccagaccaacccaagttggtt 21668984  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 80
Target Start/End: Complemental strand, 24827897 - 24827825
Alignment:
Q  8 cgaacctgagacctcaaggaggaatacacttccagatttcaagtcaattccaccgggccaacctaagtgggtt 80  Q
    ||||||||||||||| |||||||   |||| |||| |  ||||||||| ||||||| |||||| |||||||||    
T  24827897 cgaacctgagacctcgaggaggagcgcactcccaggtcccaagtcaataccaccggaccaaccaaagtgggtt 24827825  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 81
Target Start/End: Complemental strand, 47044792 - 47044716
Alignment:
Q  5 aatcgaacctgagacctcaaggaggaatacacttccagatttcaagtcaattccaccgggccaacctaagtgggtta 81  Q
    |||||||||||||||||| |||||||  | |||  |||||  ||||||||| ||||| |||||| | ||||||||||    
T  47044792 aatcgaacctgagacctcgaggaggagcaaactctcagatcccaagtcaataccaccaggccaatccaagtgggtta 47044716  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 80
Target Start/End: Original strand, 10499110 - 10499185
Alignment:
Q  5 aatcgaacctgagacctcaaggaggaatacacttccagatttcaagtcaattccaccgggccaacctaagtgggtt 80  Q
    ||||||||||||||||||||||| ||  | ||| ||||||  |||| |||| ||||| |||||||| |||||||||    
T  10499110 aatcgaacctgagacctcaaggaagagcagactcccagatcccaagccaataccaccaggccaacccaagtgggtt 10499185  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 80
Target Start/End: Original strand, 37788466 - 37788541
Alignment:
Q  5 aatcgaacctgagacctcaaggaggaatacacttccagatttcaagtcaattccaccgggccaacctaagtgggtt 80  Q
    |||||||||||||||||  |||||||  ||||| | || || ||||||||| |||| ||||||||| |||||||||    
T  37788466 aatcgaacctgagaccttgaggaggagcacactcctaggttccaagtcaataccactgggccaacccaagtgggtt 37788541  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 2667941 - 2667872
Alignment:
Q  1 agataatcgaacctgagacctcaaggaggaatacacttccagatttcaagtcaattccaccgggccaacc 70  Q
    |||||||||||||||||||||| |||| ||  ||||| ||||||  |||| |||| ||||| ||||||||    
T  2667941 agataatcgaacctgagacctcgaggaagagcacactcccagatcccaagccaataccaccaggccaacc 2667872  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 12761587 - 12761522
Alignment:
Q  5 aatcgaacctgagacctcaaggaggaatacacttccagatttcaagtcaattccaccgggccaacc 70  Q
    |||||||||||||| |||||||||||| ||||| |||| |  ||||||||| ||||| | ||||||    
T  12761587 aatcgaacctgagagctcaaggaggaacacactcccaggtcccaagtcaataccaccagaccaacc 12761522  T

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Target: scaffold0044 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 55
Target Start/End: Complemental strand, 93022 - 92972
Alignment:
Q  5 aatcgaacctgagacctcaaggaggaatacacttccagatttcaagtcaat 55  Q
    |||||||||| |||||||||||||||  ||||| ||||||| |||||||||    
T  93022 aatcgaacctcagacctcaaggaggatcacactcccagattccaagtcaat 92972  T

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