View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324A_low_410 (Length: 229)
Name: NF11324A_low_410
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_410 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 13 - 229
Target Start/End: Original strand, 43260853 - 43261069
Alignment:
| Q |
13 |
agacactattattaatgaaaaagcaaacatatatttaagaaaaaattgagtgagagataaaccttaacaggaggagaagaagctgccttgacaacaaagg |
112 |
Q |
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| T |
43260853 |
agacactattattaatgaaaaagcaaacatatatttaaggaaaaattgagtgagagatagaccttaacaggaggagaagaagctgccttgacaacaaagg |
43260952 |
T |
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| Q |
113 |
aaccttttctagaagaccctattgaagatgggagtgatcttgctccaaaactctgcctcacagcttcagctgcaaaagtaagagatgatgacgacactag |
212 |
Q |
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| T |
43260953 |
aaccttttctagaagaccctattgaagatgggagtgatcttgctccaaaactctgtctcacagcttcagctgcaaaagtaagagatgatgacgacactag |
43261052 |
T |
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| Q |
213 |
agcttgtgtagccatgt |
229 |
Q |
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| T |
43261053 |
agcttgtgtagccatgt |
43261069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 13 - 229
Target Start/End: Original strand, 43257264 - 43257473
Alignment:
| Q |
13 |
agacactattattaatgaaaaagcaaacatatatttaagaaaaaattgagtgagagataaaccttaacaggaggagaagaagctgccttgacaacaaagg |
112 |
Q |
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|||||||||||||||| |||||||||||||||| |||||||||| |||||||||||||||||||| ||||||| || |||||||||||||||||| |
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| T |
43257264 |
agacactattattaat-aaaaagcaaacatataattaagaaaaatttgagtgagagataaaccttgacaggagcag------ctgccttgacaacaaagg |
43257356 |
T |
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| Q |
113 |
aaccttttctagaagaccctattgaagatgggagtgatcttgctccaaaactctgcctcacagcttcagctgcaaaagtaagagatgatgacgacactag |
212 |
Q |
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| T |
43257357 |
atccttttctagaagacccaattgaagatgggagtgatcttgctccaaaactctgtcttacagcttcagctgcaaaagtaagagatgacgacgacaatag |
43257456 |
T |
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| Q |
213 |
agcttgtgtagccatgt |
229 |
Q |
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| T |
43257457 |
aacttgtgtagccatgt |
43257473 |
T |
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