View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324A_low_411 (Length: 229)
Name: NF11324A_low_411
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_411 |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 183; Significance: 4e-99; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 38 - 229
Target Start/End: Original strand, 3594047 - 3594240
Alignment:
| Q |
38 |
tattatttgtacat--ctcacttcagtattaaaaatagcttcacattatcctaaatatatatgtcattaccaaaattactataaggatatttgatcttat |
135 |
Q |
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| T |
3594047 |
tattatttgtacatatctcacttcagtattaaaaatagcttcacattatcctaaatatatatgtcattaccaaaattactataaggatatttgatcttat |
3594146 |
T |
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| Q |
136 |
ttgattttgtaattttaacaactgttttatggtgttaaaataattcaaacctaaatatagggggtgctactttcccctcccttgatgcagaaaa |
229 |
Q |
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| T |
3594147 |
ttgattttgtaattttaacaactgttttatggtgttaaaataattcaaacctaaatatagggggtgctactttcccctcccttgatgcagaaaa |
3594240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 38 - 229
Target Start/End: Original strand, 3580135 - 3580329
Alignment:
| Q |
38 |
tattatttgtacatctcacttcagtattaaaaatagcttcacattatcctaaatatatatgtcattaccaaaattactataaggatatttgatcttattt |
137 |
Q |
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| T |
3580135 |
tattatttgtgcatctcactttagtattaaaaatagcttcacattatcgtaaatatatacgtcattaccaaaattactataaggatatttgatcttattt |
3580234 |
T |
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| Q |
138 |
gattttgtaattttaacaactgttttatggtgttaaaataattcaaaccta---aatatagggggtgctactttcccctcccttgatgcagaaaa |
229 |
Q |
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| T |
3580235 |
gattttgtaattttaacaactgttttatggcgataaaataattcaaacctaaataatataggaggtgctactttcccctcccttgatgcagaaaa |
3580329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 36 - 185
Target Start/End: Original strand, 3571679 - 3571827
Alignment:
| Q |
36 |
agtattatttgtacatctcacttcagtattaaaaatagcttcacattatcctaaatatatatgtcattaccaaaattactataaggatatttgatcttat |
135 |
Q |
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||||||||||||||| ||||||| |||||||||||||| ||||||||| | ||||||||||||||||||||||||||| |||||| |||||||||||||| |
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| T |
3571679 |
agtattatttgtaca-ctcacttaagtattaaaaatagtttcacattaccgtaaatatatatgtcattaccaaaattattataagcatatttgatcttat |
3571777 |
T |
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| Q |
136 |
ttgattttgtaattttaacaactgttttatggtgttaaaataattcaaac |
185 |
Q |
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| T |
3571778 |
ttgattttgtaattttaacaactgttttatggcgttaatataattcaaac |
3571827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 182 - 229
Target Start/End: Original strand, 3571841 - 3571888
Alignment:
| Q |
182 |
aaacctaaatatagggggtgctactttcccctcccttgatgcagaaaa |
229 |
Q |
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| T |
3571841 |
aaacctaaatataaagggtgctactttcccctcccttgatgcagaaaa |
3571888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 104
Target Start/End: Original strand, 3564397 - 3564458
Alignment:
| Q |
43 |
tttgtacatctcacttcagtattaaaaatagcttcacattatcctaaatatatatgtcatta |
104 |
Q |
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| T |
3564397 |
tttgtacagctctatttagtattaaaaatagtttcacattatcgtaaatatatatgtaatta |
3564458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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