View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324A_low_415 (Length: 229)
Name: NF11324A_low_415
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_415 |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 2727698 - 2727475
Alignment:
| Q |
1 |
gtcagtcgatcataattgttcgatcatgtaaaagtttgacttccattatatcaaattaaaagtcagacaaatgtgatggtttgtgatcggttgacgctat |
100 |
Q |
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| T |
2727698 |
gtcagtcgatcataattgttcgatcatgtaaaagtttgacttccattatatcaaattaaaagtcagacaaatgtgatggtttgtgatcggttgacgctat |
2727599 |
T |
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| Q |
101 |
agaaagttttacactgatagtacataaaaattattctctaagtaatgagttagttgttatgatttgtttgaataaaaaggttaattaagcacttattaga |
200 |
Q |
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| T |
2727598 |
agaaagttttacactgatagtacataaaaattattctctaagtaatgagttagttgttatgatttgtttgaataaaaaggttaattaagcacttattaga |
2727499 |
T |
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| Q |
201 |
ttagtgttgatgtatagactattt |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
2727498 |
ttagtgttgatgtatagactattt |
2727475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 40264013 - 40263923
Alignment:
| Q |
1 |
gtcagtcgatcataattgttcgatcatgtaaaagtttgacttccattatatcaaatt-aaaagtcagacaaatgtgatggtttgtgatcggtt |
92 |
Q |
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| T |
40264013 |
gtcagtcaatcataactgttcgatcactaaaaagtttgactttcatcatatctaattaaaaagtcttacaaa--tgatggattgtgatcggtt |
40263923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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