View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324A_low_416 (Length: 229)
Name: NF11324A_low_416
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_416 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 6 - 229
Target Start/End: Original strand, 3308180 - 3308403
Alignment:
| Q |
6 |
aagaagaaagtgaatgaggaaaagaatttatggagaagaatcaaacttgaaaacttgtaggactacctaaggatcaaagggtagttggatggaagtggag |
105 |
Q |
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| T |
3308180 |
aagaagaaagtgaatgaggaaaagaattcatggagaagaatcaaacttgaaaacttgtgggactacctaaggatcaaagggtagttggatggaagtggag |
3308279 |
T |
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| Q |
106 |
gtcgatgcctataacagggttcaagaatttcttggacttgatcagttttgctgaagagtaattcgagcactcaagagagcaacaagtggttgatgggtaa |
205 |
Q |
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| T |
3308280 |
gtcgatgcctataacagggttcaagaatttctcggacttgatcagttttgctgaagagtaatttcggcactcaagagagcaacaagtggttgatgggtaa |
3308379 |
T |
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| Q |
206 |
atattgagcattaccacttatttg |
229 |
Q |
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| T |
3308380 |
atattgagcattaccacttatttg |
3308403 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 169
Target Start/End: Original strand, 4386380 - 4386426
Alignment:
| Q |
123 |
ggttcaagaatttcttggacttgatcagttttgctgaagagtaattc |
169 |
Q |
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| T |
4386380 |
ggttcaagaattgcttggacttggtcaattttgttgaagagtaattc |
4386426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 104
Target Start/End: Complemental strand, 16257364 - 16257296
Alignment:
| Q |
36 |
tggagaagaatcaaacttgaaaacttgtaggactacctaaggatcaaagggtagttggatggaagtgga |
104 |
Q |
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| T |
16257364 |
tggaaaagaaccaaacttggaaacttgtaaagctacctaaacaccaaagggtagttggatgcaagtgga |
16257296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 104
Target Start/End: Original strand, 16626784 - 16626852
Alignment:
| Q |
36 |
tggagaagaatcaaacttgaaaacttgtaggactacctaaggatcaaagggtagttggatggaagtgga |
104 |
Q |
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| T |
16626784 |
tggaaaagaaccaaacttgaaaacttgtgaagctacctaaacaccaaagggtagttggatgcaagtgga |
16626852 |
T |
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