View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11324A_low_417 (Length: 229)
Name: NF11324A_low_417
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_417 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 124; Significance: 6e-64; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 34675965 - 34676112
Alignment:
| Q |
1 |
ttattctatcatttcaattttaggatacaaatatttctttacacgtgttgatgattcacatcattaatagact-ccctagtcttctccttaaatttaaat |
99 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
34675965 |
ttattctatcatttcaattttgggatacaaatatttccttacacgtgttgatgattcacatcattaatagactcccctagtattctccttaaatttaaat |
34676064 |
T |
|
| Q |
100 |
gcccctaggaacttcttttccaaccacctcccaatattatgcatctta |
147 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
34676065 |
gcccctaggaacttcttttccgaccacctcccaatattatgcatctta |
34676112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 147 - 229
Target Start/End: Original strand, 34676366 - 34676448
Alignment:
| Q |
147 |
agtaaatctttaggtgtttgatctatgcaacttccttgaaatctcacaagtcaatctatttccaatcatttacctattattga |
229 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34676366 |
agtaaatttttaggtgtttgatctatgcaacttccttgaaatctcacaagtcaatctatttccaatcatttacctattattga |
34676448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University