View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324A_low_42 (Length: 419)
Name: NF11324A_low_42
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_42 |
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Alignment Details
Target: chr8 (Bit Score: 372; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 10 - 413
Target Start/End: Complemental strand, 4236321 - 4235918
Alignment:
| Q |
10 |
gatgaaacagtggttgaaggtgaacaatttcgtaacttcacacacgaagagaggttggcgaaagttgagaaaatatctgtgatggcaaggtcttctcctt |
109 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| | |
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| T |
4236321 |
gatgaaacagtggttgaaggcgaacaatttcgtaacttcacacacgaagagaggttggcgaaagttgagaaaatctctgtgatggcaagatcttctccat |
4236222 |
T |
|
| Q |
110 |
ttgataaacttctaatggtacaatgcttaaaacaaaaaggtcatgtagttgctgtaactggagatggaacaaacgatgcaccggcattgaaagaagctga |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
4236221 |
ttgataaacttctaatggtacaatgcttaaaacaaaaaggtcatgtagttgctgtaaccggagacggaacaaacgatgcaccagcattgaaagaagctga |
4236122 |
T |
|
| Q |
210 |
tattggactttcaatgggaattcaaggtactgaagtagcaaaagagagttcagatattgttatattagatgacaattttgcatctatagtaacagttata |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
4236121 |
tattggactttcaatgggaattcaaggtactgaagtagcaaaagagagttcagatattgttatattagatgacaattttgcatctattgtaacagttata |
4236022 |
T |
|
| Q |
310 |
aattggggaagatgtgtttacaacaacattcaaaaattcattcaatttcaattaacagtgaatgtggcagcacttgttataaattttgtcgcggcggttt |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4236021 |
aattggggaagatgtgtttacaacaacattcaaaaattcattcaatttcaattaacagtgaatgtggcagcacttgttataaattttgtcgcggcggttt |
4235922 |
T |
|
| Q |
410 |
cagc |
413 |
Q |
| |
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|||| |
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| T |
4235921 |
cagc |
4235918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 193 - 256
Target Start/End: Original strand, 30441333 - 30441396
Alignment:
| Q |
193 |
gcattgaaagaagctgatattggactttcaatgggaattcaaggtactgaagtagcaaaagaga |
256 |
Q |
| |
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||||||| |||||||| ||||||| |||| ||||||||||||||||| ||||| |||||||||| |
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| T |
30441333 |
gcattgatagaagctggtattggaatttccatgggaattcaaggtaccgaagttgcaaaagaga |
30441396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 285; Significance: 1e-159; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 9 - 413
Target Start/End: Complemental strand, 6185446 - 6185042
Alignment:
| Q |
9 |
agatgaaacagtggttgaaggtgaacaatttcgtaacttcacacacgaagagaggttggcgaaagttgagaaaatatctgtgatggcaaggtcttctcct |
108 |
Q |
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||||||||| ||||||||||| ||||||||||| ||||| || ||||||||||| || | || ||||| ||||||| |||||||||||| || ||||| |
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| T |
6185446 |
agatgaaacggtggttgaaggcgaacaatttcgcaactttacgcacgaagagagattagaaaaggttgaaaaaatatgtgtgatggcaagatcatctcca |
6185347 |
T |
|
| Q |
109 |
tttgataaacttctaatggtacaatgcttaaaacaaaaaggtcatgtagttgctgtaactggagatggaacaaacgatgcaccggcattgaaagaagctg |
208 |
Q |
| |
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||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |
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| T |
6185346 |
tttgacaaacttctaatggttcaatgcttaaaacaaaaaggtcatgtagttgctgtaacaggagatggaacaaacgatgcaccggcattgaaagaagccg |
6185247 |
T |
|
| Q |
209 |
atattggactttcaatgggaattcaaggtactgaagtagcaaaagagagttcagatattgttatattagatgacaattttgcatctatagtaacagttat |
308 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |
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| T |
6185246 |
atatcggactttcaatgggaattcaaggtactgaagttgcaaaagagagttcagatattgttatattagatgacaattttgcatctatcgtaacagtgtt |
6185147 |
T |
|
| Q |
309 |
aaattggggaagatgtgtttacaacaacattcaaaaattcattcaatttcaattaacagtgaatgtggcagcacttgttataaattttgtcgcggcggtt |
408 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||| || ||||||||| |
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| T |
6185146 |
aaactggggaagatgtgtttacaacaacattcaaaaattcattcaatttcaactaacagtgaatgtggcagcccttgttatcaatttcgttgcggcggtt |
6185047 |
T |
|
| Q |
409 |
tcagc |
413 |
Q |
| |
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||||| |
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|
| T |
6185046 |
tcagc |
6185042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 128; Significance: 5e-66; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 175 - 394
Target Start/End: Complemental strand, 19593039 - 19592829
Alignment:
| Q |
175 |
ggaacaaacgatgcaccggcattgaaagaagctgatattggactttcaatgggaattcaaggtactgaagtagcaaaagagagttcagatattgttatat |
274 |
Q |
| |
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|||| ||| |||||| | ||| ||||||||||| |||||| |||||| |||| |||||||||||| ||||| ||||||||||| |||||||||||||||| |
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| T |
19593039 |
ggaagaaatgatgcatcagcactgaaagaagctaatattgaactttccatggaaattcaaggtaccgaagttgcaaaagagagctcagatattgttatat |
19592940 |
T |
|
| Q |
275 |
tagatgacaattttgcatctatagtaacagttataaattggggaagatgtgtttacaacaacattcaaaaattcattcaatttcaattaacagtgaatgt |
374 |
Q |
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| T |
19592939 |
tagatgacaattttgcatctatagtaacaattttaaattggggaagatgtgtttacaacaacattcaaaaattcattcaatt---------agtgaatgt |
19592849 |
T |
|
| Q |
375 |
ggcagcacttgttataaatt |
394 |
Q |
| |
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||||||||||||||| |||| |
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| T |
19592848 |
ggcagcacttgttatcaatt |
19592829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 115 - 392
Target Start/End: Complemental strand, 38357160 - 38356883
Alignment:
| Q |
115 |
aaacttctaatggtacaatgcttaaaacaaaaaggtcatgtagttgctgtaactggagatggaacaaacgatgcaccggcattgaaagaagctgatattg |
214 |
Q |
| |
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|||||| | ||||| |||||||||| | | ||||||||||||||||| || || || || || |||||||||||||| || || |||||||||||||| | |
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| T |
38357160 |
aaacttttgatggtgcaatgcttaagaaagaaaggtcatgtagttgcggtcacaggcgacggcacaaacgatgcacctgccttaaaagaagctgatatag |
38357061 |
T |
|
| Q |
215 |
gactttcaatgggaattcaaggtactgaagtagcaaaagagagttcagatattgttatattagatgacaattttgcatctatagtaacagttataaattg |
314 |
Q |
| |
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||||||| |||||||| ||||| || ||||| || ||||| ||||| ||||| || || ||||| ||||| || ||| | | ||| ||| ||| || |
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| T |
38357060 |
gactttctatgggaatccaaggaaccgaagtcgccaaagaaagttccgatatcgtcatcttagacgacaacttcaattctgttgcaactgttttaaggtg |
38356961 |
T |
|
| Q |
315 |
gggaagatgtgtttacaacaacattcaaaaattcattcaatttcaattaacagtgaatgtggcagcacttgttataaa |
392 |
Q |
| |
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|||||||||||||||||||||||| || ||||| ||||| |||||| ||||||||||||| ||||||||||| ||||| |
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|
| T |
38356960 |
gggaagatgtgtttacaacaacatccagaaatttattcagtttcaactaacagtgaatgttgcagcacttgtgataaa |
38356883 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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