View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324A_low_420 (Length: 229)
Name: NF11324A_low_420
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_420 |
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Alignment Details
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 553173 - 552951
Alignment:
| Q |
1 |
attgtaatcctaattcatccccagcagttacagattccagagcaaatgttactgtcataggtgaaagacattttctaaatgaacaatatacaacttaaat |
100 |
Q |
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|||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |
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| T |
553173 |
attgtagtcctaattcatctccagcagttacagattccagagcaaatgttactgtcataggtgagagacattttctaaatgaacaatctacaacttaaat |
553074 |
T |
|
| Q |
101 |
aattcttgaaacaaatctacaacttgaaccatgtttagatatagagcattatttgcttcacctggattttagcattgcaaatatgaattaaaacattgag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
553073 |
aattcttgaaacaaatctacaacttgaaccatgtttagatatagagcattatttgcttcacctggattttagcattgcaaatatgaattaaaacattgag |
552974 |
T |
|
| Q |
201 |
ttgtgttatttgaacatccatat |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
552973 |
ttgtgttatttgaacatccatat |
552951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 223
Target Start/End: Original strand, 36670892 - 36670927
Alignment:
| Q |
188 |
ttaaaacattgagttgtgttatttgaacatccatat |
223 |
Q |
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|||||| ||||||||||||||||||||||||||||| |
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| T |
36670892 |
ttaaaaaattgagttgtgttatttgaacatccatat |
36670927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 223
Target Start/End: Original strand, 53786099 - 53786128
Alignment:
| Q |
194 |
cattgagttgtgttatttgaacatccatat |
223 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
53786099 |
cattgagttgtgttatttgaacatccatat |
53786128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 223
Target Start/End: Original strand, 53801644 - 53801672
Alignment:
| Q |
195 |
attgagttgtgttatttgaacatccatat |
223 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
53801644 |
attgagttgtgttatttgaacatccatat |
53801672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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