View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324A_low_424 (Length: 228)
Name: NF11324A_low_424
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_424 |
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Alignment Details
Target: chr2 (Bit Score: 131; Significance: 4e-68; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 74 - 216
Target Start/End: Complemental strand, 45345308 - 45345166
Alignment:
| Q |
74 |
agcacaagaggaggctgccacaaactctgcctcagtggtggacaatgttacaacaggctgcttctttgatgcccatgagactgctccaccagacagtaaa |
173 |
Q |
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| T |
45345308 |
agcacaagaggaggctgccacaaactctgcctcagtggtggacaatgttacaacaggctgcttctttgatgcccatgagactgctccaccagacagtaaa |
45345209 |
T |
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| Q |
174 |
aatacataaccggatgtgcttcttctatcatcaatatctccag |
216 |
Q |
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| T |
45345208 |
aatacataatcggatgtggtccttctatcatcaatatctccag |
45345166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 45342980 - 45343041
Alignment:
| Q |
16 |
aagggacttcccgttgttaaagcttcaaataaaagttgtactgaatgttttgtcggcaagca |
77 |
Q |
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| T |
45342980 |
aagggccttccacttgttaaagcttcaaataaaagttgtactgaatgttttgtcagcaagca |
45343041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 157
Target Start/End: Original strand, 654773 - 654825
Alignment:
| Q |
105 |
tcagtggtggacaatgttacaacaggctgcttctttgatgcccatgagactgc |
157 |
Q |
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| T |
654773 |
tcagtggtagataatgtaactacaagctgcttctttgatgcccaagagactgc |
654825 |
T |
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