View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324A_low_43 (Length: 418)
Name: NF11324A_low_43
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_43 |
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Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 9 - 316
Target Start/End: Original strand, 39341033 - 39341338
Alignment:
| Q |
9 |
atcatagattcaaaataagctagctacctactaactatagcatcggctcaaatcaggttggtactaattcaatgcttgatggtattgatctcaaccgtta |
108 |
Q |
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| T |
39341033 |
atcatagattcaaaataagctagctacctactaactatagcatcggctcaaatcaggttggtactaattcaatgcttgatggtattgatctcaaccgtta |
39341132 |
T |
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| Q |
109 |
gattaatcatacaattgactgcagaggtttaagatgcaggtcaacctagcattaacgcatttggcaagctcttgagctgagcaactcatgtgtggttgtg |
208 |
Q |
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| T |
39341133 |
gattaatcatacaattgactgcagaggtttaagatgcaggtcaatctagcattaacgcatttggcaagctcttgagctgagcaactcatgtgtagttgtg |
39341232 |
T |
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| Q |
209 |
ggaagaaggattttgtctgatatatgcacaagatattttgtatcatatactgatatacacgtttgtttttcatctttggatcaataaactacatttcatt |
308 |
Q |
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| T |
39341233 |
ggaagaaatattttgtctg--atatgcacaagatattttgtatcatatactgatatacaagtttgtttttcatctttggatcaataaactacatttcatt |
39341330 |
T |
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| Q |
309 |
taatataa |
316 |
Q |
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|||||||| |
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| T |
39341331 |
taatataa |
39341338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 301 - 359
Target Start/End: Complemental strand, 7890457 - 7890399
Alignment:
| Q |
301 |
atttcatttaatataatggtggaatatattgatccaataattaaaattagtttgtgcat |
359 |
Q |
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| T |
7890457 |
atttcatttaatttaatggtgaaatttattgatccaatagtgaaaactactttgtgcat |
7890399 |
T |
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