View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11324A_low_443 (Length: 224)

Name: NF11324A_low_443
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11324A_low_443
NF11324A_low_443
[»] chr6 (20 HSPs)
chr6 (1-223)||(6589338-6589560)
chr6 (13-221)||(7994209-7994417)
chr6 (1-160)||(6415891-6416050)
chr6 (9-213)||(6394736-6394940)
chr6 (13-160)||(14818307-14818454)
chr6 (13-160)||(14820618-14820765)
chr6 (119-210)||(19632314-19632405)
chr6 (1-160)||(6432086-6432245)
chr6 (9-78)||(10579759-10579828)
chr6 (1-205)||(6423097-6423301)
chr6 (1-160)||(6594621-6594780)
chr6 (16-219)||(6402723-6402929)
chr6 (9-56)||(6596951-6596998)
chr6 (9-160)||(7119082-7119233)
chr6 (9-160)||(7131560-7131711)
chr6 (1-78)||(6410013-6410090)
chr6 (11-160)||(6585262-6585411)
chr6 (108-157)||(6603324-6603373)
chr6 (1-78)||(14802343-14802420)
chr6 (128-174)||(10579879-10579925)
[»] chr3 (3 HSPs)
chr3 (1-160)||(13470747-13470906)
chr3 (9-160)||(51764463-51764614)
chr3 (130-160)||(51121037-51121067)
[»] chr7 (2 HSPs)
chr7 (1-157)||(10614521-10614677)
chr7 (9-210)||(15092174-15092375)
[»] chr8 (2 HSPs)
chr8 (11-158)||(27922435-27922582)
chr8 (1-71)||(18315288-18315358)
[»] chr5 (4 HSPs)
chr5 (1-155)||(41901550-41901704)
chr5 (11-158)||(32267402-32267549)
chr5 (9-70)||(20478105-20478166)
chr5 (11-149)||(41889579-41889717)
[»] chr4 (9 HSPs)
chr4 (1-160)||(53761787-53761943)
chr4 (11-159)||(546839-546987)
chr4 (16-56)||(1537797-1537837)
chr4 (11-77)||(640923-640989)
chr4 (10-156)||(1548448-1548594)
chr4 (10-56)||(8187115-8187161)
chr4 (13-58)||(659736-659781)
chr4 (16-56)||(12121487-12121527)
chr4 (116-160)||(55505235-55505279)
[»] chr1 (3 HSPs)
chr1 (1-71)||(19468514-19468584)
chr1 (4-70)||(9586654-9586720)
chr1 (11-71)||(52082595-52082655)
[»] scaffold0041 (1 HSPs)
scaffold0041 (13-92)||(39177-39256)
[»] scaffold0807 (1 HSPs)
scaffold0807 (13-78)||(1491-1559)
[»] chr2 (1 HSPs)
chr2 (128-165)||(45245227-45245264)


Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 6589338 - 6589560
Alignment:
Q  1 gttcccatgctggaggtgttgaacttgtcaaatacaaatgttaatgataaaacactatatctgatctcaaaaaattgtatagggcttatgcaattatcac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6589338 gttcccatgctggaggtgttgaacttgtcaaatacaaatgttaatgataaaacactatatctgatctcaaaaaattgtatagggcttatgcaattatcac 6589437  T
Q  101 ttcaactttgtaattatgtcacggaggagggagtgaaacatgtggtagaaaactgcacacgacttcaagagattcatctgggggatattcatttaagtga 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  6589438 ttcaactttgtaattatgtcacggaggagggagtgaaacatgtggtagaaaactgcacacgacttcaagagatttatctgggggatattcatttaagtga 6589537  T
Q  201 caaaactagggaaatcttctccc 223  Q
    |||||||||||||||||||||||    
T  6589538 caaaactagggaaatcttctccc 6589560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 13 - 221
Target Start/End: Original strand, 7994209 - 7994417
Alignment:
Q  13 gaggtgttgaacttgtcaaatacaaatgttaatgataaaacactatatctgatctcaaaaaattgtatagggcttatgcaattatcacttcaactttgta 112  Q
    |||||||||||| ||||||||||||  ||||||||  ||||||||||| |||||||||| ||||||   || ||| ||||| ||| |||| |||||||||    
T  7994209 gaggtgttgaacatgtcaaatacaagggttaatgacgaaacactatatgtgatctcaaagaattgttctggacttttgcaactattacttgaactttgta 7994308  T
Q  113 attatgtcacggaggagggagtgaaacatgtggtagaaaactgcacacgacttcaagagattcatctgggggatattcatttaagtgacaaaactaggga 212  Q
    || |||| || ||||||||||||||||||||||||||||||||||| | |||  |||||||| || | |||||| ||||| |||||||||||| ||||||    
T  7994309 atgatgttaccgaggagggagtgaaacatgtggtagaaaactgcacgcaactgaaagagatttatttaggggattttcatataagtgacaaaaataggga 7994408  T
Q  213 aatcttctc 221  Q
    | |||||||    
T  7994409 actcttctc 7994417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 6416050 - 6415891
Alignment:
Q  1 gttcccatgctggaggtgttgaacttgtcaaatacaaatgttaatgataaaacactatatctgatctcaaaaaattgtatagggcttatgcaattatcac 100  Q
    |||||||  ||||||||||||||||||||||||||||| |||||||||||||| || ||| |||||||||| |||||||  |||||| ||||| ||| ||    
T  6416050 gttcccaacctggaggtgttgaacttgtcaaatacaaaggttaatgataaaactctctatgtgatctcaaagaattgtagcgggcttttgcaactattac 6415951  T
Q  101 ttcaactttgtaattatgtcacggaggagggagtgaaacatgtggtagaaaactgcacac 160  Q
    || || ||||| || ||||||| || | ||||||||||||||||||||| ||||||||||    
T  6415950 ttgaattttgtgataatgtcacagaagtgggagtgaaacatgtggtagagaactgcacac 6415891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 9 - 213
Target Start/End: Complemental strand, 6394940 - 6394736
Alignment:
Q  9 gctggaggtgttgaacttgtcaaatacaaatgttaatgataaaacactatatctgatctcaaaaaattgtatagggcttatgcaattatcacttcaactt 108  Q
    |||||||||||||||||||||||||||||  ||| ||||| |||| || | | |||||||||| ||||||   |||||| ||||||||  |||| |   |    
T  6394940 gctggaggtgttgaacttgtcaaatacaagcgttgatgatgaaactctttctgtgatctcaaagaattgttgtgggcttttgcaattacaacttgataat 6394841  T
Q  109 tgtaattatgtcacggaggagggagtgaaacatgtggtagaaaactgcacacgacttcaagagattcatctgggggatattcatttaagtgacaaaacta 208  Q
    |||||  ||||||| ||  |||| ||| |||||||||||||||||||||||| | |   ||||||| || ||||||||||| || |||||||| ||| ||    
T  6394840 tgtaaaaatgtcacagaaaagggtgtggaacatgtggtagaaaactgcacacaattgagagagattaatttgggggatattgatgtaagtgacgaaaata 6394741  T
Q  209 gggaa 213  Q
    |||||    
T  6394740 gggaa 6394736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 13 - 160
Target Start/End: Complemental strand, 14818454 - 14818307
Alignment:
Q  13 gaggtgttgaacttgtcaaatacaaatgttaatgataaaacactatatctgatctcaaaaaattgtatagggcttatgcaattatcacttcaactttgta 112  Q
    |||||||||||||| ||||||||||| ||| || || ||||||| ||| ||||||| || ||||||   |||||| ||| ||||| |||| ||  |||||    
T  14818454 gaggtgttgaacttatcaaatacaaaggttgataatgaaacactttatatgatctccaagaattgttctgggcttttgcgattattacttgaaaattgta 14818355  T
Q  113 attatgtcacggaggagggagtgaaacatgtggtagaaaactgcacac 160  Q
    || ||||||| ||| |||| ||||||||||| ||||||||||||||||    
T  14818354 ataatgtcacagagaagggtgtgaaacatgtagtagaaaactgcacac 14818307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 13 - 160
Target Start/End: Complemental strand, 14820765 - 14820618
Alignment:
Q  13 gaggtgttgaacttgtcaaatacaaatgttaatgataaaacactatatctgatctcaaaaaattgtatagggcttatgcaattatcacttcaactttgta 112  Q
    |||||||||||||| ||||||||||| ||| || || ||||||| ||| ||||||| || ||||||   |||||| ||| ||||| |||| ||   ||||    
T  14820765 gaggtgttgaacttatcaaatacaaaggttgataatgaaacactttatatgatctccaagaattgttgtgggcttttgcgattattacttgaaaaatgta 14820666  T
Q  113 attatgtcacggaggagggagtgaaacatgtggtagaaaactgcacac 160  Q
    || ||||||| ||| |||| ||||||||||||||| ||||||||||||    
T  14820665 atgatgtcacagagaagggtgtgaaacatgtggtaaaaaactgcacac 14820618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 119 - 210
Target Start/End: Complemental strand, 19632405 - 19632314
Alignment:
Q  119 tcacggaggagggagtgaaacatgtggtagaaaactgcacacgacttcaagagattcatctgggggatattcatttaagtgacaaaactagg 210  Q
    |||| ||| ||||||||||||| |||||||||||||||| || |||  | |||||| || ||||||||||||||| ||||||||||||||||    
T  19632405 tcacagagaagggagtgaaacacgtggtagaaaactgcaaacaactgaaggagatttatttgggggatattcattcaagtgacaaaactagg 19632314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 6432245 - 6432086
Alignment:
Q  1 gttcccatgctggaggtgttgaacttgtcaaatacaaatgttaatgataaaacactatatctgatctcaaaaaattgtatagggcttatgcaattatcac 100  Q
    ||||||| |||| ||||||||||||||||||||||||  ||| ||||| ||||||| ||| |||||| ||| ||||||   |||||| ||||| |||  |    
T  6432245 gttcccaagctgaaggtgttgaacttgtcaaatacaagcgttgatgatgaaacactttatgtgatcttaaagaattgttgtgggcttctgcaactattcc 6432146  T
Q  101 ttcaactttgtaattatgtcacggaggagggagtgaaacatgtggtagaaaactgcacac 160  Q
    |  |   |||| || |||||||  || |||||||||||| |||||||||||| |||||||    
T  6432145 tgtacaattgtgataatgtcacacagaagggagtgaaacttgtggtagaaaaatgcacac 6432086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 9 - 78
Target Start/End: Original strand, 10579759 - 10579828
Alignment:
Q  9 gctggaggtgttgaacttgtcaaatacaaatgttaatgataaaacactatatctgatctcaaaaaattgt 78  Q
    |||||||||||||||||||||| ||||||| ||| ||||||||||||| |||  ||||||||| ||||||    
T  10579759 gctggaggtgttgaacttgtcatatacaaaagttgatgataaaacactctattcgatctcaaagaattgt 10579828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 6423301 - 6423097
Alignment:
Q  1 gttcccatgctggaggtgttgaacttgtcaaatacaaatgttaatgataaaacactatatctgatctcaaaaaattgtatagggcttatgcaattatcac 100  Q
    ||||||| |||||||||||||||||||||||||||||  ||||  ||||||||||| |||  ||||||||| | ||||   ||| || ||||| ||| ||    
T  6423301 gttcccaagctggaggtgttgaacttgtcaaatacaagagttagcgataaaacactctatgcgatctcaaagagttgttgtgggattttgcaactattac 6423202  T
Q  101 ttcaactttgtaattatgtcacggaggagggagtgaaacatgtggtagaaaactgcacacgacttcaagagattcatctgggggatattcatttaagtga 200  Q
    || ||  |||| ||||||| ||  |  | ||| |||||| |||||||  ||||||||||| | |   ||||||| || |||| ||| ||||| |||||||    
T  6423201 ttgaagattgtgattatgtaacaaacaaaggactgaaacgtgtggtattaaactgcacacaattgagagagatttatttgggagattttcatgtaagtga 6423102  T
Q  201 caaaa 205  Q
    |||||    
T  6423101 caaaa 6423097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 6594621 - 6594780
Alignment:
Q  1 gttcccatgctggaggtgttgaacttgtcaaatacaaatgttaatgataaaacactatatctgatctcaaaaaattgtatagggcttatgcaattatcac 100  Q
    |||||||  |||||||||||| |||||||||||||| | ||| ||||| | ||||||  | |||||||||| ||||||   |||||| | ||| ||  ||    
T  6594621 gttcccaaactggaggtgttgtacttgtcaaatacagaggttgatgatgagacactacgtgtgatctcaaagaattgttgtgggcttttacaactaaaac 6594720  T
Q  101 ttcaactttgtaattatgtcacggaggagggagtgaaacatgtggtagaaaactgcacac 160  Q
    |  ||  |||| || || |||| ||||||||||  |||||||||||||||||||||||||    
T  6594721 tagaaaattgtgatcatctcacagaggagggagccaaacatgtggtagaaaactgcacac 6594780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 219
Target Start/End: Complemental strand, 6402929 - 6402723
Alignment:
Q  16 gtgttgaacttgtcaaatacaaatgttaatgataaaacactatatctgatctcaaaaaattgtatagggcttatgcaattatcacttcaactttgtaatt 115  Q
    ||||||||||||||| |||| || ||| ||||| ||||||| ||| |||||||||| |||||||  |||||| || || ||| | |   |  |||| ||     
T  6402929 gtgttgaacttgtcagatacgaaggttgatgatgaaacactctatgtgatctcaaagaattgtagtgggcttttgaaactattattgagagattgttata 6402830  T
Q  116 atgtcacggaggagggagtgaaacatgtggtagaaaactgcacacgacttcaagagattcatctggggg---atattcatttaagtgacaaaactaggga 212  Q
    ||||||| ||  |||||| |||||||||| |||||||||| |||| |||   ||||||| || || |||    | ||||||||| |||||||||||||||    
T  6402829 atgtcacagaaaagggagcgaaacatgtgatagaaaactgtacacaactgagagagatttatttgagggtttgttttcatttaactgacaaaactaggga 6402730  T
Q  213 aatcttc 219  Q
    | |||||    
T  6402729 actcttc 6402723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 56
Target Start/End: Original strand, 6596951 - 6596998
Alignment:
Q  9 gctggaggtgttgaacttgtcaaatacaaatgttaatgataaaacact 56  Q
    ||||||||||||||||||||||| |||||||||| ||||| |||||||    
T  6596951 gctggaggtgttgaacttgtcaagtacaaatgttgatgatgaaacact 6596998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 160
Target Start/End: Complemental strand, 7119233 - 7119082
Alignment:
Q  9 gctggaggtgttgaacttgtcaaatacaaatgttaatgataaaacactatatctgatctcaaaaaattgtatagggcttatgcaattatcacttcaactt 108  Q
    |||||||||||||||||||||| |||| || ||| ||||| |||||||  || ||||||| || ||||||   |||||| || || ||| |||  ||  |    
T  7119233 gctggaggtgttgaacttgtcagatacgaaggttgatgatgaaacactccatgtgatctcgaagaattgttgcgggcttttggaactattactgaaagat 7119134  T
Q  109 tgtaattatgtcacggaggagggagtgaaacatgtggtagaaaactgcacac 160  Q
    ||| ||||||||||  |  | | |||||||||||||| ||||||||||||||    
T  7119133 tgttattatgtcacaaaaaaagaagtgaaacatgtggaagaaaactgcacac 7119082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 160
Target Start/End: Complemental strand, 7131711 - 7131560
Alignment:
Q  9 gctggaggtgttgaacttgtcaaatacaaatgttaatgataaaacactatatctgatctcaaaaaattgtatagggcttatgcaattatcacttcaactt 108  Q
    |||||||||||||||||||||| |||| || ||| ||||| |||||||  || ||||||| || ||||||   |||||| || || ||| |||  ||  |    
T  7131711 gctggaggtgttgaacttgtcagatacgaaggttgatgatgaaacactccatgtgatctcgaagaattgttgcgggcttttggaactattactgaaagat 7131612  T
Q  109 tgtaattatgtcacggaggagggagtgaaacatgtggtagaaaactgcacac 160  Q
    ||| ||||||||||  |  | | |||||||||||||| ||||||||||||||    
T  7131611 tgttattatgtcacaaacaaagcagtgaaacatgtggaagaaaactgcacac 7131560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 6410090 - 6410013
Alignment:
Q  1 gttcccatgctggaggtgttgaacttgtcaaatacaaatgttaatgataaaacactatatctgatctcaaaaaattgt 78  Q
    ||||||| |||| |||||||||||| |||||||||||  ||| ||||| |||| || ||| |||||||||| ||||||    
T  6410090 gttcccaagctgaaggtgttgaactagtcaaatacaagcgttgatgatgaaactctttatgtgatctcaaagaattgt 6410013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 160
Target Start/End: Original strand, 6585262 - 6585411
Alignment:
Q  11 tggaggtgttgaacttgtcaaatacaaatgttaatgataaaacactatatctgatctcaaaaaattgtatagggcttatgcaattatcacttcaactttg 110  Q
    ||||||| |||||||||||| ||||||| ||| ||||| ||||||| ||| |||||||||| | ||||   | |||| || || ||| |||  ||  |||    
T  6585262 tggaggtattgaacttgtcagatacaaaggttgatgatgaaacactctatgtgatctcaaagagttgttctgcgcttttggaactattactgaaaggttg 6585361  T
Q  111 taattatgtcacggaggagggagtgaaacatgtggtagaaaactgcacac 160  Q
    | |  ||||||| ||| ||||| ||||||||||||||||||  |||||||    
T  6585362 tgaaaatgtcacagagaagggactgaaacatgtggtagaaatttgcacac 6585411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 157
Target Start/End: Original strand, 6603324 - 6603373
Alignment:
Q  108 ttgtaattatgtcacggaggagggagtgaaacatgtggtagaaaactgca 157  Q
    |||| |||||||||| ||| | ||||||||||||||||||||||||||||    
T  6603324 ttgttattatgtcacagagaaaggagtgaaacatgtggtagaaaactgca 6603373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 14802420 - 14802343
Alignment:
Q  1 gttcccatgctggaggtgttgaacttgtcaaatacaaatgttaatgataaaacactatatctgatctcaaaaaattgt 78  Q
    ||||||| | |||| |||||||| |||||||||||||| ||| ||||| ||||||| ||| |||| ||||| ||||||    
T  14802420 gttcccaagatggaagtgttgaatttgtcaaatacaaaggttgatgatgaaacactctatgtgatttcaaagaattgt 14802343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 174
Target Start/End: Original strand, 10579879 - 10579925
Alignment:
Q  128 agggagtgaaacatgtggtagaaaactgcacacgacttcaagagatt 174  Q
    ||||||| ||||||||||||||||||||||||| ||||  |||||||    
T  10579879 agggagttaaacatgtggtagaaaactgcacacaacttagagagatt 10579925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 88; Significance: 2e-42; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 13470747 - 13470906
Alignment:
Q  1 gttcccatgctggaggtgttgaacttgtcaaatacaaatgttaatgataaaacactatatctgatctcaaaaaattgtatagggcttatgcaattatcac 100  Q
    |||||||  ||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||| ||||||   |||||| ||||| ||| ||    
T  13470747 gttcccaatctggaggtgttgaacttgtcaaatacaaaggttaatgataaaacactctatatgatctcaaagaattgttgtgggcttttgcaactattac 13470846  T
Q  101 ttcaactttgtaattatgtcacggaggagggagtgaaacatgtggtagaaaactgcacac 160  Q
    || |||||||| || ||||||| || ||||||||||||||||||||||| ||||||||||    
T  13470847 ttgaactttgtcataatgtcacagaagagggagtgaaacatgtggtagagaactgcacac 13470906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 9 - 160
Target Start/End: Original strand, 51764463 - 51764614
Alignment:
Q  9 gctggaggtgttgaacttgtcaaatacaaatgttaatgataaaacactatatctgatctcaaaaaattgtatagggcttatgcaattatcacttcaactt 108  Q
    ||||||||||||  ||||||||  |||||| ||| ||||||||||||| |||  ||||||||| ||||||   |||||| ||||| ||| |||  ||| |    
T  51764463 gctggaggtgttagacttgtcatttacaaaagttgatgataaaacactctatgcgatctcaaagaattgttgcgggcttttgcaactattactggaacat 51764562  T
Q  109 tgtaattatgtcacggaggagggagtgaaacatgtggtagaaaactgcacac 160  Q
    ||| || |||||| |||| ||||||||||||||||||| |||||||||||||    
T  51764563 tgtgataatgtcaaggagaagggagtgaaacatgtggttgaaaactgcacac 51764614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 160
Target Start/End: Original strand, 51121037 - 51121067
Alignment:
Q  130 ggagtgaaacatgtggtagaaaactgcacac 160  Q
    |||||||||||||||||||||||||||||||    
T  51121037 ggagtgaaacatgtggtagaaaactgcacac 51121067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 10614677 - 10614521
Alignment:
Q  1 gttcccatgctggaggtgttgaacttgtcaaatacaaatgttaatgataaaacactatatctgatctcaaaaaattgtatagggcttatgcaattatcac 100  Q
    |||||||  |||||||||||||||||||||||||| || ||||||||||||||||| ||| ||||||| || || ||||  |||||| ||||| ||| ||    
T  10614677 gttcccaatctggaggtgttgaacttgtcaaatacgaaggttaatgataaaacactctatgtgatctcgaagaactgtagtgggcttttgcaactattac 10614578  T
Q  101 ttcaactttgtaattatgtcacggaggagggagtgaaacatgtggtagaaaactgca 157  Q
    || |||||| | || ||||||| || || ||||||||||||||||||||||||||||    
T  10614577 ttgaactttctcataatgtcacagaagaaggagtgaaacatgtggtagaaaactgca 10614521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 9 - 210
Target Start/End: Original strand, 15092174 - 15092375
Alignment:
Q  9 gctggaggtgttgaacttgtcaaatacaaatgttaatgataaaacactatatctgatctcaaaaaattgtatagggcttatgcaattatcacttcaactt 108  Q
    ||||||||||||||| |||||| | ||||| ||||||||||||||||| |||  ||||||||| ||||||   |||||| ||||| ||| |||| || ||    
T  15092174 gctggaggtgttgaatttgtcagaaacaaaggttaatgataaaacactctatgcgatctcaaagaattgttgtgggcttttgcaactattacttgaattt 15092273  T
Q  109 tgtaattatgtcacggaggagggagtgaaacatgtggtagaaaactgcacacgacttcaagagattcatctgggggatattcatttaagtgacaaaacta 208  Q
    ||| || ||||||| || | |||||||||||||||| ||||||||||||||| | |   ||||||| || || || |||| ||| |||||||||||||||    
T  15092274 tgttataatgtcacagaagtgggagtgaaacatgtgctagaaaactgcacacaattgagagagattaatttgcggtatatccatgtaagtgacaaaacta 15092373  T
Q  209 gg 210  Q
    ||    
T  15092374 gg 15092375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 11 - 158
Target Start/End: Complemental strand, 27922582 - 27922435
Alignment:
Q  11 tggaggtgttgaacttgtcaaatacaaatgttaatgataaaacactatatctgatctcaaaaaattgtatagggcttatgcaattatcacttcaactttg 110  Q
    |||||||||||||||||||| ||||||||||| ||||| || |||| ||| |||||||||| | ||||   |||||| || |||| |||||| ||  |||    
T  27922582 tggaggtgttgaacttgtcatatacaaatgttgatgatgaagcactttatatgatctcaaagagttgttgtgggcttttgaaattgtcacttgaaaattg 27922483  T
Q  111 taattatgtcacggaggagggagtgaaacatgtggtagaaaactgcac 158  Q
    |||| || ||||  || |||||||||| ||||||||||||||||||||    
T  27922482 taatgatttcacaaagaagggagtgaaccatgtggtagaaaactgcac 27922435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 18315288 - 18315358
Alignment:
Q  1 gttcccatgctggaggtgttgaacttgtcaaatacaaatgttaatgataaaacactatatctgatctcaaa 71  Q
    |||||||  ||||||||||||||||||||| ||||||| ||| ||||| || |||| ||| ||||||||||    
T  18315288 gttcccaaactggaggtgttgaacttgtcacatacaaaagttgatgatgaagcactctatgtgatctcaaa 18315358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 9e-23; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 41901550 - 41901704
Alignment:
Q  1 gttcccatgctggaggtgttgaacttgtcaaatacaaatgttaatgataaaacactatatctgatctcaaaaaattgtatagggcttatgcaattatcac 100  Q
    |||||||  ||||||||||||||||||||| ||||||| ||| ||||| || |||| ||| |||||||||| | ||||   || ||| || |||| ||||    
T  41901550 gttcccaaactggaggtgttgaacttgtcatatacaaaagttgatgatgaagcactttatatgatctcaaagagttgttgtggacttttgaaattgtcac 41901649  T
Q  101 ttcaactttgtaattatgtcacggaggagggagtgaaacatgtggtagaaaactg 155  Q
    |||||  ||||||| |||||||  || |||||||||| |||||||||||||||||    
T  41901650 ttcaagattgtaatgatgtcacaaagaagggagtgaagcatgtggtagaaaactg 41901704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 158
Target Start/End: Complemental strand, 32267549 - 32267402
Alignment:
Q  11 tggaggtgttgaacttgtcaaatacaaatgttaatgataaaacactatatctgatctcaaaaaattgtatagggcttatgcaattatcacttcaactttg 110  Q
    ||||||| |||||||||||| | ||||  ||| ||||| || |||| ||| |||||||||| | ||||   |||||| || |||| |||||| ||  |||    
T  32267549 tggaggtattgaacttgtcacaaacaatagttgatgatgaagcactttatatgatctcaaagagttgttgtgggcttttgaaattgtcacttaaaaattg 32267450  T
Q  111 taattatgtcacggaggagggagtgaaacatgtggtagaaaactgcac 158  Q
    |||| || ||||  || |||||||||| ||||| ||||||||||||||    
T  32267449 taatgatatcacaaagaagggagtgaagcatgtagtagaaaactgcac 32267402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 20478105 - 20478166
Alignment:
Q  9 gctggaggtgttgaacttgtcaaatacaaatgttaatgataaaacactatatctgatctcaa 70  Q
    |||||||||||||||||||||| ||||||||||| ||||  ||||| ||| | |||||||||    
T  20478105 gctggaggtgttgaacttgtcatatacaaatgttgatgacgaaacattatctgtgatctcaa 20478166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 149
Target Start/End: Original strand, 41889579 - 41889717
Alignment:
Q  11 tggaggtgttgaacttgtcaaatacaaatgttaatgataaaacactatatctgatctcaaaaaattgtatagggcttatgcaattatcacttcaactttg 110  Q
    |||||||||||||||| ||| ||||||| ||| ||||| ||||||| |||  ||||||||| | ||||   ||||||  | |||| | |||| ||  |||    
T  41889579 tggaggtgttgaacttatcatatacaaaagttgatgatgaaacactttataagatctcaaagagttgttgcgggctttcgaaattgttacttaaaaattg 41889678  T
Q  111 taattatgtcacggaggagggagtgaaacatgtggtaga 149  Q
    | || |||||||  || |||||||||| |||||||||||    
T  41889679 ttatgatgtcacaaagaagggagtgaatcatgtggtaga 41889717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 53761787 - 53761943
Alignment:
Q  1 gttcccatgctggaggtgttgaacttgtcaaatacaaatgttaatgataaaacactatatctgatctcaaaaaattgtatagggcttatgcaattatcac 100  Q
    ||||||| ||| |||| |||||||||||||  ||| || ||||| ||||||||||| | |  |||||| || ||||||   |||||| |||||| || ||    
T  53761787 gttcccaagctagaggcgttgaacttgtcatttacgaaagttaacgataaaacactctgt--gatctcgaagaattgtcgtgggcttttgcaat-attac 53761883  T
Q  101 ttcaactttgtaattatgtcacggaggagggagtgaaacatgtggtagaaaactgcacac 160  Q
    |  ||| |||| || ||||||||||  |||||||||||||||||| ||||||||||||||    
T  53761884 tgaaacattgtgataatgtcacggacaagggagtgaaacatgtggaagaaaactgcacac 53761943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 11 - 159
Target Start/End: Complemental strand, 546987 - 546839
Alignment:
Q  11 tggaggtgttgaacttgtcaaatacaaatgttaatgataaaacactatatctgatctcaaaaaattgtatagggcttatgcaattatcacttcaactttg 110  Q
    |||||||| |||||||||||  ||||| ||| |||||| ||||||| ||| |||||||||| | ||||   |||||| || |||| | |||  ||   ||    
T  546987 tggaggtggtgaacttgtcacgtacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggcttttggaattgttactggaagaatg 546888  T
Q  111 taattatgtcacggaggagggagtgaaacatgtggtagaaaactgcaca 159  Q
    |  | ||||||| ||| ||||||||||||||||| ||||||||||||||    
T  546887 ttttcatgtcacagagaagggagtgaaacatgtgctagaaaactgcaca 546839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 1537797 - 1537837
Alignment:
Q  16 gtgttgaacttgtcaaatacaaatgttaatgataaaacact 56  Q
    ||||||||||||||| |||||||||||||||| ||||||||    
T  1537797 gtgttgaacttgtcatatacaaatgttaatgacaaaacact 1537837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 77
Target Start/End: Complemental strand, 640989 - 640923
Alignment:
Q  11 tggaggtgttgaacttgtcaaatacaaatgttaatgataaaacactatatctgatctcaaaaaattg 77  Q
    |||||||||||||||||||| ||||||| ||| ||||| ||||||| ||  ||| |||||| |||||    
T  640989 tggaggtgttgaacttgtcagatacaaacgttgatgatgaaacactctacgtgacctcaaagaattg 640923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 156
Target Start/End: Original strand, 1548448 - 1548594
Alignment:
Q  10 ctggaggtgttgaacttgtcaaatacaaatgttaatgataaaacactatatctgatctcaaaaaattgtatagggcttatgcaattatcacttcaacttt 109  Q
    ||||||||||||||||||||| |||||| | || ||||| |||||||  || |||||||||| | ||||   |||||| |||| || | ||   ||| ||    
T  1548448 ctggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtgggcttttgcacttgttacaaaaacgtt 1548547  T
Q  110 gtaattatgtcacggaggagggagtgaaacatgtggtagaaaactgc 156  Q
    ||||  || |||| ||| |||||||||||||| | | ||||||||||    
T  1548548 gtaaaaatatcacagagaagggagtgaaacatatagaagaaaactgc 1548594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 56
Target Start/End: Original strand, 8187115 - 8187161
Alignment:
Q  10 ctggaggtgttgaacttgtcaaatacaaatgttaatgataaaacact 56  Q
    ||||||||||||||||||||| ||||||  ||| |||||||||||||    
T  8187115 ctggaggtgttgaacttgtcacatacaagagttgatgataaaacact 8187161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 659781 - 659736
Alignment:
Q  13 gaggtgttgaacttgtcaaatacaaatgttaatgataaaacactat 58  Q
    |||||||||||||||||| |||||| ||||||| || |||||||||    
T  659781 gaggtgttgaacttgtcacatacaagtgttaataatgaaacactat 659736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 12121487 - 12121527
Alignment:
Q  16 gtgttgaacttgtcaaatacaaatgttaatgataaaacact 56  Q
    ||||||||||||||| ||||||||||| ||||| |||||||    
T  12121487 gtgttgaacttgtcatatacaaatgttgatgatgaaacact 12121527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 160
Target Start/End: Original strand, 55505235 - 55505279
Alignment:
Q  116 atgtcacggaggagggagtgaaacatgtggtagaaaactgcacac 160  Q
    ||||||| ||| ||||||||||||| ||| |||||||||||||||    
T  55505235 atgtcacagagaagggagtgaaacacgtgttagaaaactgcacac 55505279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 19468514 - 19468584
Alignment:
Q  1 gttcccatgctggaggtgttgaacttgtcaaatacaaatgttaatgataaaacactatatctgatctcaaa 71  Q
    ||||||| ||||||||||||||| |||||| ||||||| ||| ||||| ||||||| ||| ||||||||||    
T  19468514 gttcccaagctggaggtgttgaagttgtcagatacaaaggttgatgatgaaacactttatgtgatctcaaa 19468584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 70
Target Start/End: Complemental strand, 9586720 - 9586654
Alignment:
Q  4 cccatgctggaggtgttgaacttgtcaaatacaaatgttaatgataaaacactatatctgatctcaa 70  Q
    |||| ||| |||||||||||||||||| ||||| ||||||||||| ||||||| ||| ||| |||||    
T  9586720 cccaagctagaggtgttgaacttgtcatatacagatgttaatgatgaaacactttatgtgacctcaa 9586654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 71
Target Start/End: Complemental strand, 52082655 - 52082595
Alignment:
Q  11 tggaggtgttgaacttgtcaaatacaaatgttaatgataaaacactatatctgatctcaaa 71  Q
    |||||||||||||||||||||| |||||  || ||||| ||||| | ||| ||||||||||    
T  52082655 tggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaa 52082595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 92
Target Start/End: Complemental strand, 39256 - 39177
Alignment:
Q  13 gaggtgttgaacttgtcaaatacaaatgttaatgataaaacactatatctgatctcaaaaaattgtatagggcttatgca 92  Q
    ||||||||||||||| ||  |||||| ||||||||| ||||||| ||| |||||||||| | |||||  |||||| ||||    
T  39256 gaggtgttgaacttgacatttacaaaggttaatgatgaaacactttatgtgatctcaaagagttgtagtgggcttttgca 39177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0807 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0807
Description:

Target: scaffold0807; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 1491 - 1559
Alignment:
Q  13 gaggtgttgaacttgtcaaatacaaatgt---taatgataaaacactatatctgatctcaaaaaattgt 78  Q
    ||||||||| |||||||||||||||||||   | ||||| ||||||| ||| |||||||||| ||||||    
T  1491 gaggtgttggacttgtcaaatacaaatgttgatgatgatgaaacactctatgtgatctcaaagaattgt 1559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 165
Target Start/End: Original strand, 45245227 - 45245264
Alignment:
Q  128 agggagtgaaacatgtggtagaaaactgcacacgactt 165  Q
    ||||||||||||||||||||||||| ||||||| ||||    
T  45245227 agggagtgaaacatgtggtagaaaattgcacacaactt 45245264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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