View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11324A_low_449 (Length: 221)

Name: NF11324A_low_449
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11324A_low_449
NF11324A_low_449
[»] chr6 (9 HSPs)
chr6 (19-193)||(28097221-28097395)
chr6 (31-146)||(29827263-29827378)
chr6 (118-184)||(28186633-28186699)
chr6 (121-184)||(28326717-28326780)
chr6 (121-184)||(28504353-28504416)
chr6 (34-164)||(27697379-27697509)
chr6 (118-184)||(28296617-28296683)
chr6 (118-184)||(28515390-28515456)
chr6 (34-146)||(29842785-29842897)
[»] chr2 (1 HSPs)
chr2 (34-193)||(3280889-3281048)
[»] chr5 (1 HSPs)
chr5 (19-184)||(16692106-16692271)
[»] scaffold0019 (1 HSPs)
scaffold0019 (19-182)||(57072-57235)
[»] chr8 (1 HSPs)
chr8 (19-155)||(31906322-31906458)
[»] chr4 (1 HSPs)
chr4 (63-184)||(5089772-5089893)


Alignment Details
Target: chr6 (Bit Score: 171; Significance: 5e-92; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 19 - 193
Target Start/End: Original strand, 28097221 - 28097395
Alignment:
Q  19 aaaacactcctctcatcttcctccaaagcatcaaaactcacacgaagtattttttgaatctcttcactaggaattctttcatatcgatccaacaaagaat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28097221 aaaacactcctctcatcttcctccaaagcatcaaaactcacacgaagtattttttgaatctcttcactaggaattctttcatatcgatccaacaaagaat 28097320  T
Q  119 tccattcttctatatgctttccatacaagttggaacctaatatttccaaggccaatggaaggccagcagaataat 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  28097321 tccattcttctatatgctttccatacaagttggaacctaatatttccaaggccaatggaaggccagcagcataat 28097395  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 31 - 146
Target Start/End: Complemental strand, 29827378 - 29827263
Alignment:
Q  31 tcatcttcctccaaagcatcaaaactcacacgaagtattttttgaatctcttcactaggaattctttcatatcgatccaacaaagaattccattcttcta 130  Q
    |||||||||||||||||||||||||| |    |||||| ||||| ||||||| | ||||||| |||||||||| ||| || | ||| |||||||||||||    
T  29827378 tcatcttcctccaaagcatcaaaacttattttaagtatattttggatctctttattaggaatcctttcatatctatctaatatagatttccattcttcta 29827279  T
Q  131 tatgctttccatacaa 146  Q
    ||| ||||||| ||||    
T  29827278 tattctttccaaacaa 29827263  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 118 - 184
Target Start/End: Complemental strand, 28186699 - 28186633
Alignment:
Q  118 ttccattcttctatatgctttccatacaagttggaacctaatatttccaaggccaatggaaggccag 184  Q
    ||||||||| |||||| ||||||| ||||||||||||| | || ||| || ||||||||||||||||    
T  28186699 ttccattctcctatattctttccaaacaagttggaacccactacttctaaagccaatggaaggccag 28186633  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 184
Target Start/End: Complemental strand, 28326780 - 28326717
Alignment:
Q  121 cattcttctatatgctttccatacaagttggaacctaatatttccaaggccaatggaaggccag 184  Q
    |||||| |||||| ||||||| ||||||||||||| | || ||| || ||||||||||||||||    
T  28326780 cattctactatattctttccaaacaagttggaacccactacttctaaagccaatggaaggccag 28326717  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 184
Target Start/End: Complemental strand, 28504416 - 28504353
Alignment:
Q  121 cattcttctatatgctttccatacaagttggaacctaatatttccaaggccaatggaaggccag 184  Q
    |||||| |||||| ||||||| ||||||||||||| | || ||| || ||||||||||||||||    
T  28504416 cattctactatattctttccaaacaagttggaacccactacttctaaagccaatggaaggccag 28504353  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 164
Target Start/End: Original strand, 27697379 - 27697509
Alignment:
Q  34 tcttcctccaaagcatcaaaactcacacgaagtattttttgaatctcttcactaggaattctttcatatcgatccaacaaagaattccattcttctatat 133  Q
    ||||| |||||||||||| | ||||| | |||||| ||||| ||||||| | | ||||| || ||||| | ||| || | | | |||||||||||||| |    
T  27697379 tcttcttccaaagcatcatagctcactctaagtatcttttggatctctttattgggaatcctgtcatacccatctaatatatacttccattcttctatgt 27697478  T
Q  134 gctttccatacaagttggaacctaatatttc 164  Q
     ||||||| ||||||| ||||| | ||||||    
T  27697479 tctttccaaacaagttagaacccactatttc 27697509  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 184
Target Start/End: Original strand, 28296617 - 28296683
Alignment:
Q  118 ttccattcttctatatgctttccatacaagttggaacctaatatttccaaggccaatggaaggccag 184  Q
    |||||||||  ||||| ||||||| ||||||||||||| | || ||| || ||||||||||||||||    
T  28296617 ttccattctcttatattctttccaaacaagttggaacccactacttctaaagccaatggaaggccag 28296683  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 184
Target Start/End: Complemental strand, 28515456 - 28515390
Alignment:
Q  118 ttccattcttctatatgctttccatacaagttggaacctaatatttccaaggccaatggaaggccag 184  Q
    |||||||||  ||||| ||||||| ||||||||||||| | || ||| || ||||||||||||||||    
T  28515456 ttccattctcttatattctttccaaacaagttggaacccactacttctaaagccaatggaaggccag 28515390  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 146
Target Start/End: Original strand, 29842785 - 29842897
Alignment:
Q  34 tcttcctccaaagcatcaaaactcacacgaagtattttttgaatctcttcactaggaattctttcatatcgatccaacaaagaattccattcttctatat 133  Q
    |||||||||||||||||||| || |    |||||| || || ||||||| | ||||||| |||||||| | ||| ||   ||| ||||||||||||||||    
T  29842785 tcttcctccaaagcatcaaagcttattttaagtatattgtggatctctttattaggaatcctttcatacctatctaatgtagatttccattcttctatat 29842884  T
Q  134 gctttccatacaa 146  Q
     ||||||| ||||    
T  29842885 tctttccaaacaa 29842897  T

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Target: chr2 (Bit Score: 92; Significance: 7e-45; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 34 - 193
Target Start/End: Complemental strand, 3281048 - 3280889
Alignment:
Q  34 tcttcctccaaagcatcaaaactcacacgaagtattttttgaatctcttcactaggaattctttcatatcgatccaacaaagaattccattcttctatat 133  Q
    ||||||||||||||||||||||||||   |||||| || |||||||||| | ||||||| ||||||||||||||||||||||||||||| |||| |||||    
T  3281048 tcttcctccaaagcatcaaaactcactttaagtatcttctgaatctctttattaggaatcctttcatatcgatccaacaaagaattccactcttttatat 3280949  T
Q  134 gctttccatacaagttggaacctaatatttccaaggccaatggaaggccagcagaataat 193  Q
     ||||||| |||||||||||||||||| ||| || |||||||||||||||| || |||||    
T  3280948 tctttccaaacaagttggaacctaatacttctaatgccaatggaaggccagaagcataat 3280889  T

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Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 184
Target Start/End: Complemental strand, 16692271 - 16692106
Alignment:
Q  19 aaaacactcctctcatcttcctccaaagcatcaaaactcacacgaagtattttttgaatctcttcactaggaattctttcatatcgatccaacaaagaat 118  Q
    ||||||||| | |||||||||||||||  ||||||||| ||   ||||||||| |||||   || || |||||| | |||||||||||| ||   ||| |    
T  16692271 aaaacactcttttcatcttcctccaaactatcaaaacttactttaagtattttgtgaattcgtttaccaggaatccattcatatcgatcaaatgtagatt 16692172  T
Q  119 tccattcttctatatgctttccatacaagttggaacctaatatttccaaggccaatggaaggccag 184  Q
    ||||||||||||||| ||||||| ||||||| || |||| || ||| || || |||||||||||||    
T  16692171 tccattcttctatattctttccaaacaagttagatcctactacttctaaagctaatggaaggccag 16692106  T

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Target: scaffold0019 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 19 - 182
Target Start/End: Original strand, 57072 - 57235
Alignment:
Q  19 aaaacactcctctcatcttcctccaaagcatcaaaactcacacgaagtattttttgaatctcttcactaggaattctttcatatcgatccaacaaagaat 118  Q
    |||||| || ||||||||||||||||||||||||| || ||   |||||| | ||| |||| || | | ||||| ||||||||  |||  ||   ||| |    
T  57072 aaaacattcttctcatcttcctccaaagcatcaaagcttactttaagtatctcttggatctttttaatgggaatcctttcatactgatttaatgcagatt 57171  T
Q  119 tccattcttctatatgctttccatacaagttggaacctaatatttccaaggccaatggaaggcc 182  Q
    |||||||| |||||| ||||||| ||||||| ||||| | || ||| |||||||||||||||||    
T  57172 tccattctcctatattctttccaaacaagttcgaacccactacttctaaggccaatggaaggcc 57235  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 155
Target Start/End: Complemental strand, 31906458 - 31906322
Alignment:
Q  19 aaaacactcctctcatcttcctccaaagcatcaaaactcacacgaagtattttttgaatctcttcactaggaattctttcatatcgatccaacaaagaat 118  Q
    ||||||||  |||||||||||||||||||||||||||| ||    ||||| ||||| ||||||| | | |||||  ||||||||||||  ||   ||| |    
T  31906458 aaaacacttttctcatcttcctccaaagcatcaaaacttactttgagtatattttggatctctttatttggaatgatttcatatcgatgtaatgcagatt 31906359  T
Q  119 tccattcttctatatgctttccatacaagttggaacc 155  Q
     |||||||| ||||| ||||||| | || ||||||||    
T  31906358 cccattcttgtatattctttccaaataaattggaacc 31906322  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 63 - 184
Target Start/End: Original strand, 5089772 - 5089893
Alignment:
Q  63 aagtattttttgaatctcttcactaggaattctttcatatcgatccaacaaagaattccattcttctatatgctttccatacaagttggaacctaatatt 162  Q
    |||||| ||||| || |||| | ||||||| ||||||||   ||| |  ||||| ||||||| |||||||| ||||||| |||| |||||||| |  | |    
T  5089772 aagtatcttttggatttctttattaggaatcctttcatactcatctagtaaagatttccatttttctatatcctttccaaacaaattggaacccacaact 5089871  T
Q  163 tccaaggccaatggaaggccag 184  Q
    || || ||||||||||||||||    
T  5089872 tctaaagccaatggaaggccag 5089893  T

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