View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324A_low_456 (Length: 218)
Name: NF11324A_low_456
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_456 |
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Alignment Details
Target: chr8 (Bit Score: 114; Significance: 5e-58; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 71 - 208
Target Start/End: Complemental strand, 15551570 - 15551433
Alignment:
| Q |
71 |
gtaatcaatgtgctgactacatggccaagctaggagtgtcatcagattttgattttgttctccatccgaccgcacctcatgatctcctcgacatgcttag |
170 |
Q |
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| T |
15551570 |
gtaatcaatgtgctgactacatgaccaagctaggagggtcatcagattttgattttgttctccatccgaccgcacctcaggatctcctcgacatgcttag |
15551471 |
T |
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| Q |
171 |
aactgatgccatgttaactttcttccctacagcctaag |
208 |
Q |
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| T |
15551470 |
aactgatgccatgggaactttcttccctagagcctaag |
15551433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 110; Significance: 1e-55; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 71 - 208
Target Start/End: Complemental strand, 38645205 - 38645068
Alignment:
| Q |
71 |
gtaatcaatgtgctgactacatggccaagctaggagtgtcatcagattttgattttgttctccatccgaccgcacctcatgatctcctcgacatgcttag |
170 |
Q |
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||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |
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| T |
38645205 |
gtaattaatgtgctgactacatggccaagctaggagcgtcatcagattttgattttattctccatccgaccgcacctcaggatctcctcgacatgcttag |
38645106 |
T |
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| Q |
171 |
aactgatgccatgttaactttcttccctacagcctaag |
208 |
Q |
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| T |
38645105 |
aactgatgccatgggaactttcttccctagagcctaag |
38645068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 3955311 - 3955351
Alignment:
| Q |
21 |
atagctcaattgacatggacgatacattattatatgcaggg |
61 |
Q |
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| T |
3955311 |
atagctcaattgacagggacaatgcattattatatgcaggg |
3955351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 71 - 208
Target Start/End: Original strand, 32892539 - 32892676
Alignment:
| Q |
71 |
gtaatcaatgtgctgactacatggccaagctaggagtgtcatcagattttgattttgttctccatccgaccgcacctcatgatctcctcgacatgcttag |
170 |
Q |
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||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |
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| T |
32892539 |
gtaataaatgtgctgactacatggccaagctaggagcgtcatcagattttgattttattctccatccgaccgcacctcaggatctcctcgacatgcttag |
32892638 |
T |
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| Q |
171 |
aactgatgccatgttaactttcttccctacagcctaag |
208 |
Q |
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||||||||||||| |||||||||||||| |||||||| |
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| T |
32892639 |
aactgatgccatgggaactttcttccctagagcctaag |
32892676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 79; Significance: 4e-37; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 83 - 197
Target Start/End: Complemental strand, 11579491 - 11579377
Alignment:
| Q |
83 |
ctgactacatggccaagctaggagtgtcatcagattttgattttgttctccatccgaccgcacctcatgatctcctcgacatgcttagaactgatgccat |
182 |
Q |
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|||||||||| ||||||||||||| |||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||| |||||||||||| ||| |
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| T |
11579491 |
ctgactacattgccaagctaggagcgtcatcagattttgattttgttttccatccgtccgcacctcaggatctcctcgacatgtttagaactgatgtcat |
11579392 |
T |
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| Q |
183 |
gttaactttcttccc |
197 |
Q |
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| T |
11579391 |
ggaaactttcttccc |
11579377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 8742654 - 8742694
Alignment:
| Q |
21 |
atagctcaattgacatggacgatacattattatatgcaggg |
61 |
Q |
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|||||||| |||||| |||| |||||||||||||||||||| |
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| T |
8742654 |
atagctcagttgacagggacaatacattattatatgcaggg |
8742694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 30616003 - 30616043
Alignment:
| Q |
21 |
atagctcaattgacatggacgatacattattatatgcaggg |
61 |
Q |
| |
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|||||||||||||||||||| || |||| |||||||||||| |
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| T |
30616003 |
atagctcaattgacatggacaatgcattgttatatgcaggg |
30616043 |
T |
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