View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324A_low_469 (Length: 214)
Name: NF11324A_low_469
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_469 |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 20 - 198
Target Start/End: Original strand, 42799229 - 42799407
Alignment:
| Q |
20 |
caagatagcattttactctgtatgcactagagttatgcagaattcatacttgacaaggttcaatgcaatgagagcttatatgatatagtacacaccttga |
119 |
Q |
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| T |
42799229 |
caagatagcattttactctgtatgcactagagttatgcagaattcatacttgacaaggttcaatgcaatgagagcttatatgatatagtacacaccttga |
42799328 |
T |
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| Q |
120 |
tgatctgttttggtgtcacaaggggaagaccaacatcagatagttccttggttccccaactttcgaaccattgatgtcc |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
42799329 |
tgatctgttttggtgtcacaaggggaagaccaacatcagatagttccttggttccccaactttcgaaccattgaagtcc |
42799407 |
T |
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