View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324A_low_47 (Length: 412)
Name: NF11324A_low_47
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_47 |
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Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 22 - 401
Target Start/End: Complemental strand, 41727722 - 41727343
Alignment:
| Q |
22 |
aaattgttaaagaaaaaataaataagctaactaattaacttgtgttcctttattaatatccaaacaatgaattttctgcttgttcaataatttgcttgca |
121 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
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| T |
41727722 |
aaattgttaaagaaaaaataaataacctaactaattaacttgtgttcctttattaatatccaaacaatggattttctgtttgttcaataatttgcttgca |
41727623 |
T |
|
| Q |
122 |
tcttctgcnnnnnnnnnnnnntggtgtttgttggcggttcctaaaagccccaaaaggtggttgagaggtttgaaagatgtgtgaagctttcgaaaaatca |
221 |
Q |
| |
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|||||||| |||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41727622 |
tcttctgcaaaaaagaaaaa-tggtatttgcttgcggttcctaaaagccccaaaaggtggttgagaggtttgaaagatgtgtgaagctttcgaaaaatca |
41727524 |
T |
|
| Q |
222 |
aaattttgtcactaaatttcatttttgttcttttttaaactattaaaacttgaatctttcacacttaaattggttaaataaattcattaagtt-ttttaa |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |
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| T |
41727523 |
aaattttgtcactaaatttcatttttgttcttttttaaactattaaaacttgaatcttccacacttaaattggttaaataaattcattaagtttttttaa |
41727424 |
T |
|
| Q |
321 |
aaatattatctcattactctttcatggaagcacgttggtatttcaaagaaaaatatattggtttcaatggcagagcttcat |
401 |
Q |
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||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
41727423 |
aaaaattatctcattactctttcatggaagcacgatggtatttcaaagaaaaatatattggtttcaatggcaaagcttcat |
41727343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 282; Significance: 1e-158; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 25 - 401
Target Start/End: Complemental strand, 32149774 - 32149398
Alignment:
| Q |
25 |
ttgttaaagaaaaaataaataagctaactaattaacttgtgttcctttattaatatccaaacaatgaattttctgcttgttcaataatttgcttgcatct |
124 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
32149774 |
ttgttaaagaaaaaataaataagctaactaattaacttgtgttcctttattaatatccaaacaatggattttatgcttgttcaataatttgcttgcatct |
32149675 |
T |
|
| Q |
125 |
tctgcnnnnnnnnnnnnntggtgtttgttggcggttcctaaaagccccaaaaggtggttgagaggtttgaaagatgtgtgaagctttcgaaaaatcaaaa |
224 |
Q |
| |
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||||| ||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
32149674 |
tctgcaaaaaagaaaaa-tggtgtttgcttgcggttcctaaaagccccaaaaggtggttgagaggtttcaaagatgtgtgaagctttcgaaaaatcaaaa |
32149576 |
T |
|
| Q |
225 |
ttttgtcactaaatttcatttttgttcttttttaaactattaaaacttgaatctttcacacttaaattggttaaataaattcattaagttttt-taaaaa |
323 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
32149575 |
ttttgtacttaaatttcatttttgttcttttttaaactattaaaacttgaatctttcacacttaaattggttaaataaattcattaagtttttctaaaaa |
32149476 |
T |
|
| Q |
324 |
tattatctcattactctttcatggaagcacgttggtatttcaaagaaaaatatattggtttcaatggcagagcttcat |
401 |
Q |
| |
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||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32149475 |
aattatgtcattactctttcatggaagcacgttgatatttcaaagaaaaatatattggtttcaatggcagagcttcat |
32149398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 22 - 401
Target Start/End: Complemental strand, 7004993 - 7004615
Alignment:
| Q |
22 |
aaattgttaaagaaaaaataaataagctaactaattaacttgtgttcctttattaatatccaaacaatgaattttctgcttgttcaataatttgcttgca |
121 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||| |
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| T |
7004993 |
aaattgttaaagaaaaaataaataagctaactaattaacttgtgttcctttattaatatccaaataatggatttt-tgcttgttcaataatttgcttgca |
7004895 |
T |
|
| Q |
122 |
tcttctgcnnnnnnnnnnnnntggtgtttgttggcggttcctaaaagccccaaaaggtggttgagaggtttgaaagatgtgtgaagctttcgaaaaatca |
221 |
Q |
| |
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|||||||| ||||||||| | ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
7004894 |
tcttctgcaaaaaagaaaaa-tggtgtttgcttgcggttcctaaaagccccaaaagatggttgagaggtttgaaagttgtgtgaagctttcgaaaaatca |
7004796 |
T |
|
| Q |
222 |
aaattttgtcactaaatttcatttttgttcttttttaaactattaaaacttgaatctttcacacttaaattggttaaataaattcattaagttttt-taa |
320 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| | | |
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| T |
7004795 |
aaattttgtcactaaatttcatttttgttcttttttaaactattaaaacttgaatctttcacacttaaattggttaaataaattcatgaaatttttctta |
7004696 |
T |
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| Q |
321 |
aaatattatctcattactctttcatggaagcacgttggtatttcaaagaaaaatatattggtttcaatggcagagcttcat |
401 |
Q |
| |
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||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
7004695 |
aaaaattatctcattactctttcatggaagcacattggtatttcaaagaaaaatatattgatttcaatggcagagcttcat |
7004615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 22 - 401
Target Start/End: Complemental strand, 1174495 - 1174115
Alignment:
| Q |
22 |
aaattgttaaagaaaaaa-taaataagctaactaattaacttgtgttcctttattaatatccaaacaatgaattttctgcttgttcaataatttgcttgc |
120 |
Q |
| |
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||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
1174495 |
aaattgtaaaagaaaaaaataaataagctaactaattaacttgtgttcctttattaatatccaaacaatggattttctgcttgttcaataatttgcttgc |
1174396 |
T |
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| Q |
121 |
atcttctgcnnnnnnnnnnnnntggtgtttgttggcggttcctaaaagccccaaaaggtggttgagaggtttgaaagatgtgtgaagctttcgaaaaatc |
220 |
Q |
| |
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|||||| || ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1174395 |
atcttcggcaaaaaataaaaa-tggtgtttgcttgcggttcctaaaagccccaaaaggtggttgagaggtttgaaagatgtgtgaagctttcgaaaaatc |
1174297 |
T |
|
| Q |
221 |
aaaattttgtcactaaatttcatttttgttcttttttaaactattaaaacttgaatctttcacacttaaattggttaaataaattcattaagtt-tttta |
319 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||| |
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| T |
1174296 |
aaaattttgtcactaaattttatttttgttcttttttaaaatattaaaacttgaatctttcacacttaaactagttaaataaattcattaagttttttta |
1174197 |
T |
|
| Q |
320 |
aaaatattatctcattactctttcatggaagcacgttggtatttcaaagaaaaatatattggtttcaatggcagagcttcat |
401 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||| |
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|
| T |
1174196 |
aaaaatttatctcattactctttcatggaaacacgttggtatttcgaagaaaaatatattggtttcaatggtagagcttcat |
1174115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 158 - 269
Target Start/End: Original strand, 1013292 - 1013407
Alignment:
| Q |
158 |
gttcctaaaagccccaaaaggt-ggttgagaggtttgaaagatgtgtgaagcttt-cgaaaaatcaaaattttgtcactaaatttca-tttttgttc-tt |
253 |
Q |
| |
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||||||||||| ||||||| | ||||||||||||| || ||||||||||||||| ||||||||||| ||||||||| ||||||| ||||| ||| || |
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| T |
1013292 |
gttcctaaaagtcccaaaaagaaggttgagaggtttcaaggatgtgtgaagctttgaaaaaaatcaaaactttgtcactcaatttcagttttttttcatt |
1013391 |
T |
|
| Q |
254 |
ttttaaactattaaaa |
269 |
Q |
| |
|
| |||||||||||||| |
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|
| T |
1013392 |
tcttaaactattaaaa |
1013407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 22 - 109
Target Start/End: Original strand, 1013166 - 1013250
Alignment:
| Q |
22 |
aaattgttaaagaaaaaataaataagctaactaattaacttgtgttcctttattaatatccaaacaatgaattttctgcttgttcaat |
109 |
Q |
| |
|
||||||| | |||||||||||||||| | ||| ||||||| ||||||| |||||||| ||||||| |||||| |||||||||||| |
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| T |
1013166 |
aaattgtaacagaaaaaataaataagtttgctagttaacttttgttcctctattaatacccaaaca---aattttgtgcttgttcaat |
1013250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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