View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324A_low_49 (Length: 408)
Name: NF11324A_low_49
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_49 |
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| [»] scaffold1030 (2 HSPs) |
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Alignment Details
Target: scaffold1030 (Bit Score: 124; Significance: 1e-63; HSPs: 2)
Name: scaffold1030
Description:
Target: scaffold1030; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 49 - 213
Target Start/End: Complemental strand, 2416 - 2252
Alignment:
| Q |
49 |
aacatgaaaatataatggagtataactactcnnnnnnnatcggaaaattttattgataatgtaaactctgcttaagaagaacatagacctgaaaaacaaa |
148 |
Q |
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| T |
2416 |
aacatgaaaatctaatggagtataactactctttttttatcggaaaaatttattgataatgtaaactctgcttaagaagaacatagacctggaaaacaaa |
2317 |
T |
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| Q |
149 |
aagaacatatatagtaaaataagcacagaaaacccttacatctcctacatcaccacaccactaaa |
213 |
Q |
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| T |
2316 |
aagaacatatatagtaaaatacgcacagaaaacccttacatctcctacatcacgacaccactaaa |
2252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1030; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 209 - 327
Target Start/End: Complemental strand, 2136 - 2018
Alignment:
| Q |
209 |
ctaaacacctatcatatgctattcgtaccaaaaaccttttaagaaacaattaaaaccaaccaaaacacctatagtagcacctaatgttctcttctcacaa |
308 |
Q |
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| T |
2136 |
ctaaacacctatcatatgctatttgtaccaaaaacctttaaaaaaacaattaaaaccaaccaaaacacctatagtagcacctaatgttctcttcgcacaa |
2037 |
T |
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| Q |
309 |
atgagaccaaataaacacc |
327 |
Q |
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| T |
2036 |
atgagaccaaataaacacc |
2018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 97; Significance: 1e-47; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 8 - 210
Target Start/End: Original strand, 14279083 - 14279281
Alignment:
| Q |
8 |
ttggtgttgatccgttgtatattaatgattacacaattacaaacatgaaaatataatggagtataactactcnnnnnnnatcggaaaattttattgataa |
107 |
Q |
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| T |
14279083 |
ttggtgttgattcattgtatattaatgattgcacaattacaaacataaaaatgtaatagagtataactactctttttttaacggaaaaatttattgataa |
14279182 |
T |
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| Q |
108 |
tgtaaactctgcttaagaagaacatagacctgaaaaacaaaaagaacatatatagtaaaataagcacagaaaacccttacatctcctacatcaccacacc |
207 |
Q |
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| T |
14279183 |
tgtaaactttgcttaagaagaacatagacctataaataaaaaataac----atagtaaaatacgcacagaaaacccttacatctcatacatcaacacacc |
14279278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 209 - 327
Target Start/End: Original strand, 14279400 - 14279519
Alignment:
| Q |
209 |
ctaaacacctatcatatgctattcgtaccaaaaaccttttaagaaa-caattaaaaccaaccaaaacacctatagtagcacctaatgttctcttctcaca |
307 |
Q |
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| T |
14279400 |
ctaaacagctatcatatgctattcgtatcaaaaacctttaaaaaaaacaattaaaaccgaccaaaacacctatactagcacctaatgttctcttcgcaca |
14279499 |
T |
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| Q |
308 |
aatgagaccaaataaacacc |
327 |
Q |
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| T |
14279500 |
aatgagaccaaataaacacc |
14279519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 90 - 156
Target Start/End: Original strand, 14284566 - 14284632
Alignment:
| Q |
90 |
ggaaaattttattgataatgtaaactctgcttaagaagaacatagacctgaaaaacaaaaagaacat |
156 |
Q |
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| T |
14284566 |
ggaaaaatttattgataaagtagtctctcctcaagaagaacatagaccggtaaaacaaaaagaacat |
14284632 |
T |
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