View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324A_low_498 (Length: 202)
Name: NF11324A_low_498
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_498 |
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Alignment Details
Target: chr5 (Bit Score: 148; Significance: 3e-78; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 24 - 187
Target Start/End: Complemental strand, 1744343 - 1744180
Alignment:
| Q |
24 |
gtttcctttattgttgttatttggaaaacaagatgatgaaccaacttgcatagtgctaaaagatttgtgctccgacaccttggatctatgaatcaaatca |
123 |
Q |
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| T |
1744343 |
gtttcctttattgttgttatttggaaaacaagatgatgaaccaacttgcatagtgctaaaagatttgtgctccgacaccttggatctgtgaatcaaatca |
1744244 |
T |
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| Q |
124 |
tctttagacagtttcacgaaatcaacaggcttgttgaaatttgagtttgaggatggatattgtt |
187 |
Q |
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| T |
1744243 |
tctttagacagtttcacgaaatcaataggcttgttgagatttgagtttgaggatggatcttgtt |
1744180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 28 - 181
Target Start/End: Complemental strand, 1738996 - 1738843
Alignment:
| Q |
28 |
cctttattgttgttatttggaaaacaagatgatgaaccaacttgcatagtgctaaaagatttgtgctccgacaccttggatctatgaatcaaatcatctt |
127 |
Q |
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| T |
1738996 |
cctttattgttgttatttggaaaacgagatgatgaaccaacttgcatagtgctaaaaggtttgtgctctgacaccttggacatgtgaatcgaatcctctt |
1738897 |
T |
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| Q |
128 |
tagacagtttcacgaaatcaacaggcttgttgaaatttgagtttgaggatggat |
181 |
Q |
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| T |
1738896 |
tagatagtttcacaaaatcaagaggcttgttgaaattagagtttgaagatggat |
1738843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 70
Target Start/End: Complemental strand, 1760035 - 1759999
Alignment:
| Q |
34 |
ttgttgttatttggaaaacaagatgatgaaccaactt |
70 |
Q |
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| T |
1760035 |
ttgttgttatttggaaaaccagatgatgaaccaactt |
1759999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 114 - 187
Target Start/End: Complemental strand, 1724323 - 1724250
Alignment:
| Q |
114 |
aatcaaatcatctttagacagtttcacgaaatcaacaggcttgttgaaatttgagtttgaggatggatattgtt |
187 |
Q |
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| T |
1724323 |
aatcgaatcatcttttgatagcttcacataatcactaggcttgttggaattcgagtttgaggatggatcttgtt |
1724250 |
T |
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