View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324A_low_53 (Length: 404)
Name: NF11324A_low_53
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_53 |
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Alignment Details
Target: chr1 (Bit Score: 165; Significance: 4e-88; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 179 - 398
Target Start/End: Original strand, 27915071 - 27915288
Alignment:
| Q |
179 |
tagtaacatatactgtataattcaataaaatggttagctatataggggctggagttgacatacatttctattcactcataatttatcaatcattattttc |
278 |
Q |
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| T |
27915071 |
tagtaacatatattttataattcaataaaacggttaactatataggggccggaattgacatacatttctattcactcataatttatcaatcattattttc |
27915170 |
T |
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| Q |
279 |
cttctggttgccatttttctcgatcttacaatattgtgggaacactgacaaagtgcaccataaaccacaaaaccagttaccgacatatactagtactcag |
378 |
Q |
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| T |
27915171 |
cttctggttgccattttcctcgatcttacaatattgtgggaacactgacaaagtgcaccatgaaccac--aaccatttaccgacatatgttagtactcag |
27915268 |
T |
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| Q |
379 |
atttttcttaataattttag |
398 |
Q |
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|||||||||||||||||||| |
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| T |
27915269 |
atttttcttaataattttag |
27915288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 5 - 164
Target Start/End: Original strand, 27914658 - 27914817
Alignment:
| Q |
5 |
ctggatcgtgcgaagaatctagtatatatatctgcaagtggccaatcaagtactctttcatgcaagtatccatgaccaatgtattaattatttaagtacg |
104 |
Q |
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| T |
27914658 |
ctggatcgtgcgaagaatctagtatatatatctgcaagtagccaatcacgtactctttcttgcaagtttccatgaccaatgtattaattatttaagtacg |
27914757 |
T |
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| Q |
105 |
taatacgtatgttcttgtcctccgacccctactcaataaacagacaatgaaagtgtgttt |
164 |
Q |
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| T |
27914758 |
taatacgtatgttcttgtcctcagacccctactctctaaacagacaataaaagtgtgttt |
27914817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 177 - 353
Target Start/End: Original strand, 27909681 - 27909857
Alignment:
| Q |
177 |
actagtaacatatactgtataattcaataaaatggttagctatataggggctggagttgacatacatttctattcactcataatttatcaatcattattt |
276 |
Q |
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|||||||||||||| | ||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| | |
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| T |
27909681 |
actagtaacatatattttataattcaataaaatggttaactatataggggccggaattgacatacatttctattcactcataatttatcaatcattatat |
27909780 |
T |
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| Q |
277 |
tccttctggttgccatttttctcgatcttacaatattgtgggaacactgacaaagtgcaccataaaccacaaaacca |
353 |
Q |
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| T |
27909781 |
cccttctgattgccattttccttgatcttacaatatcgtgggaacacagacaaagtgcatcatgaaccacaaaacca |
27909857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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