View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324A_low_6 (Length: 534)
Name: NF11324A_low_6
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_6 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 421; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 23 - 534
Target Start/End: Original strand, 3881207 - 3881722
Alignment:
| Q |
23 |
ttaattgtcctctcttgacatctctggatgcttccttttgcaggtgatgctttatttgctagtttcttggttatcttgcttgcgtatggagtatggactg |
122 |
Q |
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| T |
3881207 |
ttaattgtcctctcttgacatctctggatgcttccttttgcaggtgatgctttatttgctagtttcttggctatcctgcttgcgtatggagtatggactg |
3881306 |
T |
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| Q |
123 |
atgtttgttgttttgaattatagtcaactcaatgacgattgcttgtctgcaacaacccgtgcctgtcgactaattgagtcattaatattaatgtcatgcc |
222 |
Q |
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| T |
3881307 |
atgtttgttgttttgaattatagtcaactcaatgatgactgcttgtctgcaacaacccgtgcctgtcgactaattgagtcattaatattaatgtcatgcc |
3881406 |
T |
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| Q |
223 |
catcgattgggttagatggactctgctccttgtattggctcccaaatttaaccctgcttgatttatcatacactttcttggtgactctgcagcctgtttt |
322 |
Q |
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| T |
3881407 |
catcgattgggttagatggaccctgctccttgtattggctcccaaatttaaccctgcttgatttatcatacactttcttggtgactctgcagcctgtttt |
3881506 |
T |
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| Q |
323 |
tgactcttgtaaacaacttaaggt-aaaagcatcatcttttagttcacat-gtttttactgtctagcatattacagattgtataatagtagcggagaac- |
419 |
Q |
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| T |
3881507 |
tgactcttgtaaacaactaaaggtaaaaaacattatattttagtttacatattttttactgtcttgcaaattacaaatagtataatagtagtgaagaacc |
3881606 |
T |
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| Q |
420 |
-ctcctcccatcctcaaaacaaatctccagaagtggtggttatttagtttgataaacctagcgaagttgtgatgttatactaccatacacacagaagttg |
518 |
Q |
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| T |
3881607 |
gctcctcccatcctcaaaacaaatctccagaagtggtggttatttagtttgataaacctagcgaagttgtgatgttatactaccatacacacagaagttg |
3881706 |
T |
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| Q |
519 |
ttcagaagagcttatt |
534 |
Q |
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| T |
3881707 |
ttcagaagagcttatt |
3881722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 23 - 467
Target Start/End: Original strand, 3867451 - 3867896
Alignment:
| Q |
23 |
ttaattgtcctctcttgacatctctggatgcttccttttgcaggtgatgctttatttgctagtttcttggttatcttgcttgcgtatggagtatggactg |
122 |
Q |
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| T |
3867451 |
ttaattgtcctctcttgacatcactggatgcttccttttgcaggtgacgctttatctgctagtttcttggttatcctgcttatgtatggagtatgtactg |
3867550 |
T |
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| Q |
123 |
atgtttgttgttttgaattatagtcaactcaatgacgattgcttgtctgcaacaacccgtgcctgtcgactaattgagtcattaatattaatgtcatgcc |
222 |
Q |
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| T |
3867551 |
at---tgttgttttgaattacagccaactcactgatgactgcttgtctgcaacaacccgtgcctgtccactgattgagtcattaatattaatgtcctgcc |
3867647 |
T |
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| Q |
223 |
catcgattgggttagatggactctgctccttgtattggctcccaaatttaaccctgcttgatttatcatacactttcttggtgactctgcagcctgtttt |
322 |
Q |
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| T |
3867648 |
catcgattgggttagatggactctgttccctgcattggctcccaaatttagctctgcttgatttatcatacactttcctggtgactctgcagcctgtttt |
3867747 |
T |
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| Q |
323 |
tgactcttgtaaacaacttaaggt-aaaagcatcatcttttagttcacat-gtttttactgtctagcatattacagattgtataatagtagcggagaac- |
419 |
Q |
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||| |||||||||||||| ||||| |||| ||| || |||||||| |||| |||||||||||| ||| |||||| || |||||||||||| | ||||| |
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| T |
3867748 |
tgattcttgtaaacaactaaaggtaaaaaacattatattttagtttacatattttttactgtcttgcaaattacaaatagtataatagtagtgaagaacc |
3867847 |
T |
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| Q |
420 |
-ctcctcccatcctcaaaacaaatctccagaagtggtggttatttagtt |
467 |
Q |
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| T |
3867848 |
gctcctcccatcctcaaaacaaatctacggaagtgagggttatttagtt |
3867896 |
T |
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