View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324A_low_60 (Length: 390)
Name: NF11324A_low_60
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_60 |
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Alignment Details
Target: chr8 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 6 - 384
Target Start/End: Complemental strand, 38936377 - 38935999
Alignment:
| Q |
6 |
acttgtggcgaacaattactttgcatcagaagcaaaatcttcgttaatccattcgctttcgtaacagcttcttgcgccttttgatcacgaaataaataac |
105 |
Q |
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| T |
38936377 |
acttgtggcgaacaattactttgcatcagaagcaaaatcttcgttaatccattcgctttcgtaacagcttcttgcgccttttgatcacgaaataaataac |
38936278 |
T |
|
| Q |
106 |
acacactccatagtattgtaaccgcgtgctccgtcgctccggtggatactttcaatactttgttcactatcgccgccacacacgacggcgcttcacatat |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
38936277 |
acacactccatagtattgtaaccgcgtgctccgtcgctacggtggatactttcaatactttgttcactatcgccaccacacacgacggcgcttcacatat |
38936178 |
T |
|
| Q |
206 |
ctccgacctcccctccttcgtcgacgacacagtttctagaagtttcaacaccttctccgtcacagaaacacacaaactatgtgacgcgattagaaggttc |
305 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
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| T |
38936177 |
ctccgacctcccctccttcgtcgacgacaccgtttctagaagtttcaacaccttctccgtcacagaaacacacaaactaggtgacgcggttagaaggttc |
38936078 |
T |
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| Q |
306 |
gagaagaccttcactgctccgagatgaaccagtttcgccttgttccgtttcggcgttgagattgctaccaaacacgaaa |
384 |
Q |
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| T |
38936077 |
gagaagaccttcactgctccgagatgaaccagtttcgccttgttccgtttcggcgttgagattgctaccaaacacgaaa |
38935999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 6 - 142
Target Start/End: Complemental strand, 43741866 - 43741730
Alignment:
| Q |
6 |
acttgtggcgaacaattactttgcatcagaagcaaaatcttcgttaatccattcgctttcgtaacagcttcttgcgccttttgatcacgaaataaataac |
105 |
Q |
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|||||||| ||||||||||| || || || | ||| ||||||||||||||||| || ||||||| |||||||| || |||||||| ||||| | ||||| |
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| T |
43741866 |
acttgtggagaacaattactctgtattagcaacaatatcttcgttaatccatttgccatcgtaaccgcttcttgtgctttttgatcgcgaaacagataac |
43741767 |
T |
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| Q |
106 |
acacactccatagtattgtaaccgcgtgctccgtcgc |
142 |
Q |
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| T |
43741766 |
aaacactccacagcgtcgttactgcgtgctccgtcgc |
43741730 |
T |
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