View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324A_low_64 (Length: 381)
Name: NF11324A_low_64
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_64 |
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Alignment Details
Target: chr2 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 152 - 328
Target Start/End: Original strand, 14537433 - 14537623
Alignment:
| Q |
152 |
tccgtcaacttttcaaacaataggaagattctatcatagaatacctaaacccaaacaatgaaatgagttctatacttcattccactccgttttgctcg-- |
249 |
Q |
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| T |
14537433 |
tccgtcaacttttcaaacaataggaagattctatcatagaatacctaaacccaaacaatgaaatgagttctatacttcattccactccattttgctcgat |
14537532 |
T |
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| Q |
250 |
--------attcaatcctgatc----agttatcttccaacaacccaaataaattttggatcaaaactaaagaaaaagatcagtactttaaa |
328 |
Q |
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| T |
14537533 |
tccactatattcaatcctgatcggttggttatcttccaacaatccaaataaattttggatcaaaactaaagaaaaagatcagtactttaaa |
14537623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 20 - 140
Target Start/End: Complemental strand, 14538789 - 14538669
Alignment:
| Q |
20 |
aaattaccagtttcgttcgcctctaacctataaatatttgaatgcctcccaaattcttaaacaatggggtggttggaccaccccaaggccctaattatta |
119 |
Q |
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| T |
14538789 |
aaattaccagtttcgttcgcctctaacctataaatatttgaatgccttccaaattcttaaacaatggggtggttggaccaccccaaggccctaattatta |
14538690 |
T |
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| Q |
120 |
cattgttgttttgcttactta |
140 |
Q |
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| T |
14538689 |
cattgttgttttgcttactta |
14538669 |
T |
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