View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324A_low_70 (Length: 373)
Name: NF11324A_low_70
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_70 |
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Alignment Details
Target: chr4 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 19 - 367
Target Start/End: Complemental strand, 33102435 - 33102087
Alignment:
| Q |
19 |
acatcagaatcaaccttaaaggaaataatagaagcagcagtttcaggaaactgttccataattagaagcttagcaccacgatactcaaaaagaaacaata |
118 |
Q |
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| T |
33102435 |
acatcagaatcaaccttaaaggaaataatagaagcagcagtttcaggaaactgttccataattagaagcttagcaccacgatactcaaaaagaaacaata |
33102336 |
T |
|
| Q |
119 |
acaaagtgtaccaaatgatacactgaagaaccacaacttgaaccataagggtaccggaatattcaccatacatagctatgagaagtggaattcccataac |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33102335 |
acaaagtgtaccaaatgatacactgaagaaccacaacttgaaccataagggtaccggaatattcaccatacatagctatgagaagtggaattcccataac |
33102236 |
T |
|
| Q |
219 |
caaagtgttgggtaatgttgaaagagagaagattgtgatcatccactctaagctaccattagctgtgaaattagtccaaattgtaagtgcaaggagcatg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33102235 |
caaagtgttgggtaatgttgaaagagagaagattgtgatcatccactctaagctaccattagctgtgaaattagtccaaattgtaagtgcaaggagcatg |
33102136 |
T |
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| Q |
319 |
atgattttttgaagtgtatcagctgcgatgaacctatagttcatggcat |
367 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33102135 |
atgattttttgaagtgtatcagctgcgatgaacctatagttcatggcat |
33102087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 218
Target Start/End: Complemental strand, 52716718 - 52716522
Alignment:
| Q |
22 |
tcagaatcaaccttaaaggaaataatagaagcagcagtttcaggaaactgttccataattagaagcttagcaccacgatactcaaaaagaaacaataaca |
121 |
Q |
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| T |
52716718 |
tcagaatcaactttgaatgatgttatagaagctgcagtttcaggaaactgttctgttataagaagtttagcagctctatattcaaacaaaaacaacataa |
52716619 |
T |
|
| Q |
122 |
aagtgtaccaaatgatacactgaagaaccacaacttgaaccataagggtaccggaatattcaccatacatagctatgagaagtggaattcccataac |
218 |
Q |
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| T |
52716618 |
gagtgtaccaaataacactttgaagaacaacaatttgtaccataagatttcctgagaaatcaccatacatagctcttaaaagagggattcccataac |
52716522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 25 - 362
Target Start/End: Original strand, 10838653 - 10838990
Alignment:
| Q |
25 |
gaatcaaccttaaaggaaataatagaagcagcagtttcaggaaactgttccataattagaagcttagcaccacgatactcaaaaagaaacaataacaaag |
124 |
Q |
| |
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||||| ||||||||||||| || ||||| || ||||| |||||||| ||||| |||| ||||||||||||||| |||||||||||||| | || | || |
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| T |
10838653 |
gaatcgaccttaaaggaaacgatggaagccgcggtttctggaaactgctccatgattaaaagcttagcaccacggtactcaaaaagaaaaagcaaaagag |
10838752 |
T |
|
| Q |
125 |
tgtaccaaatgatacactgaagaaccacaacttgaaccataagggtaccggaatattcaccatacatagctatgagaagtggaattcccataaccaaagt |
224 |
Q |
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|||||||||| ||||||||||||||||||||||||||||| | | |||| ||||| |||||||||||||| || | | |||||||||||||||||||| |
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| T |
10838753 |
tgtaccaaataatacactgaagaaccacaacttgaaccattaagctacctgaataatcaccatacatagcaattaacaaaggaattcccataaccaaagt |
10838852 |
T |
|
| Q |
225 |
gttgggtaatgttgaaagagagaagattgtgatcatccactctaagctaccattagctgtgaaattagtccaaattgtaagtgcaaggagcatgatgatt |
324 |
Q |
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||| || | |||||| | || |||||||| |||||||| ||||| | ||||| ||||| ||||| | || |||||| | |||||||||||| |
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| T |
10838853 |
gttaggaagtgttgataatgaaaagattgttatcatccattctaaattgccatttttagtgaacaatgtccataatgaaagtgctactagcatgatgatt |
10838952 |
T |
|
| Q |
325 |
ttttgaagtgtatcagctgcgatgaacctatagttcat |
362 |
Q |
| |
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||||||||||| || || || |||||||| ||||||| |
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| T |
10838953 |
ttttgaagtgtgtctgcagctatgaacctgaagttcat |
10838990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 19 - 191
Target Start/End: Complemental strand, 34971227 - 34971055
Alignment:
| Q |
19 |
acatcagaatcaaccttaaaggaaataatagaagcagcagtttcaggaaactgttccataattagaagcttagcaccacgatactcaaaaagaaacaata |
118 |
Q |
| |
|
|||||||||||||| || || || ||||||||| ||||||| |||||||||||||| | ||| |||| | ||||||| | ||||||||| | |||||| | |
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| T |
34971227 |
acatcagaatcaactttgaatgatataatagaaccagcagtatcaggaaactgttcaacaatgagaatcctagcacccctatactcaaacaaaaacaaca |
34971128 |
T |
|
| Q |
119 |
acaaagtgtaccaaatgatacactgaagaaccacaacttgaaccataagggtaccggaatattcaccatacat |
191 |
Q |
| |
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||| || |||||||||||||| |||||||| || | |||||||||||||||||| |||| ||||||||||| |
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| T |
34971127 |
tcaatgtataccaaatgatacattgaagaacaactatttgaaccataagggtaccagaatcatcaccatacat |
34971055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 120 - 227
Target Start/End: Complemental strand, 25038959 - 25038852
Alignment:
| Q |
120 |
caaagtgtaccaaatgatacactgaagaaccacaacttgaaccataagggtaccggaatattcaccatacatagctatgagaagtggaattcccataacc |
219 |
Q |
| |
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|||||| |||||||||||||| |||||||| |||| ||| ||||| | |||| ||| ||||||||||||| || | || | ||||||||||||||| |
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| T |
25038959 |
caaagtataccaaatgatacattgaagaacaacaatttgtaccattaaactacctgaaaattcaccatacattcctttaagtaaaggaattcccataacc |
25038860 |
T |
|
| Q |
220 |
aaagtgtt |
227 |
Q |
| |
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|||||||| |
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| T |
25038859 |
aaagtgtt |
25038852 |
T |
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