View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11324A_low_72 (Length: 372)

Name: NF11324A_low_72
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11324A_low_72
NF11324A_low_72
[»] chr1 (3 HSPs)
chr1 (6-360)||(7554875-7555230)
chr1 (254-360)||(19467455-19467561)
chr1 (254-301)||(30827724-30827771)
[»] chr6 (6 HSPs)
chr6 (8-360)||(9411810-9412156)
chr6 (256-306)||(6596310-6596360)
chr6 (254-306)||(10579173-10579225)
chr6 (254-299)||(6436837-6436882)
chr6 (254-299)||(7993631-7993676)
chr6 (6-62)||(6588601-6588657)
[»] chr4 (11 HSPs)
chr4 (6-360)||(8186383-8186734)
chr4 (94-197)||(1481523-1481626)
chr4 (254-357)||(1755479-1755582)
chr4 (6-120)||(21833568-21833682)
chr4 (254-360)||(571256-571362)
chr4 (254-360)||(7225185-7225290)
chr4 (6-119)||(1601184-1601300)
chr4 (259-357)||(21833304-21833402)
chr4 (260-293)||(2373565-2373598)
chr4 (260-368)||(641939-642047)
chr4 (254-290)||(2621502-2621538)
[»] chr3 (4 HSPs)
chr3 (15-120)||(513939-514044)
chr3 (6-108)||(51763672-51763774)
chr3 (275-357)||(1657474-1657556)
chr3 (254-296)||(51763487-51763529)
[»] chr8 (5 HSPs)
chr8 (260-357)||(32151900-32151997)
chr8 (6-164)||(18314854-18315012)
chr8 (254-294)||(18314728-18314768)
chr8 (326-363)||(44246337-44246374)
chr8 (328-368)||(17642951-17642991)
[»] chr5 (5 HSPs)
chr5 (83-194)||(28673460-28673571)
chr5 (306-363)||(32268513-32268570)
chr5 (257-305)||(17205662-17205710)
chr5 (83-194)||(28695710-28695821)
chr5 (306-366)||(41900512-41900572)
[»] chr7 (1 HSPs)
chr7 (254-360)||(7977799-7977905)


Alignment Details
Target: chr1 (Bit Score: 340; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 6 - 360
Target Start/End: Original strand, 7554875 - 7555230
Alignment:
Q  6 ataaagacctcaatgttggtctctcatggagagctgaaaaaa-tgcctgctttggttatgccatcacactcaaacatgataacctcttggagaagcttgc 104  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7554875 ataaagacctcaatgttggtctctcatggagagctgaaaaaaatgccagctttggttatgccatcacactcaaacatgataacctcttggagaagcttgc 7554974  T
Q  105 agttcttaaacaagtgaacaagtgatatgtcgttgatgtagtaatgttcagagagattaatcctggtgagtttggaaagtgccaatgaaagagtctccaa 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7554975 agttcttaaacaagtgaacaagtgatatgtcgttgatgtagtaatggtcagagagattaatcctggtgagtttggaaagtgccaatgaaagagtctccaa 7555074  T
Q  205 cccattaaggaagttactatgatccttaaatttattacggggataacccaggttgagttcttcgagcaaagggaaacattcagcaatgagtaacaagtca 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7555075 cccattaaggaagttactatgatccttaaatttattacggggataacccaggttgagttcttcgagcaaagggaaacattcagcaatgagtaacaagtca 7555174  T
Q  305 ttgctattgatagaatccattttggaacaagtgagtgaggttaaagttgtaatatt 360  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7555175 ttgctattgatagaatccattttggaacaagtgagtgaggttaaagttgtaatatt 7555230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 254 - 360
Target Start/End: Complemental strand, 19467561 - 19467455
Alignment:
Q  254 aggttgagttcttcgagcaaagggaaacattcagcaatgagtaacaagtcattgctattgatagaatccattttggaacaagtgagtgaggttaaagttg 353  Q
    ||||||||||||||||||||||| |||||||| || ||||| |||| |||| || |||||| |    | || | | |||||||||| ||||| |||||||    
T  19467561 aggttgagttcttcgagcaaaggaaaacattccgcgatgaggaacaggtcagtggtattgaaatctgcaatgtcgaaacaagtgagagaggtcaaagttg 19467462  T
Q  354 taatatt 360  Q
    |||||||    
T  19467461 taatatt 19467455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 254 - 301
Target Start/End: Original strand, 30827724 - 30827771
Alignment:
Q  254 aggttgagttcttcgagcaaagggaaacattcagcaatgagtaacaag 301  Q
    |||||||||| || ||||||||||||||| || |||||||||||||||    
T  30827724 aggttgagttgtttgagcaaagggaaacaatcggcaatgagtaacaag 30827771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 177; Significance: 2e-95; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 8 - 360
Target Start/End: Original strand, 9411810 - 9412156
Alignment:
Q  8 aaagacctcaatgttggtctctcatggagagctgaaaaaatgcctgctttggttatgccatcacactcaaacatgataacctcttggagaagcttgcagt 107  Q
    ||||||||||| ||||||||||||  |||||| |||| ||||||  |||||||||||| |  |||   ||||||||||||||||||||||||||| ||||    
T  9411810 aaagacctcaaggttggtctctcacagagagcagaaacaatgccaactttggttatgctacgacagcgaaacatgataacctcttggagaagcttacagt 9411909  T
Q  108 tcttaaacaagtgaacaagtgatatgtcgttgatgtagtaatgttcagagagattaatcctggtgagtttggaaagtgccaatgaaagagtctccaaccc 207  Q
    ||||||||||||  |  |||||| ||||||||||||||| |||  |||||||||||||| ||||||||||| |||||| ||||||||||||||| | ||     
T  9411910 tcttaaacaagttgaagagtgatgtgtcgttgatgtagtgatgaccagagagattaatcttggtgagtttgaaaagtgtcaatgaaagagtctctaccct 9412009  T
Q  208 attaaggaagttactatgatccttaaatttattacggggataacccaggttgagttcttcgagcaaagggaaacattcagcaatgagtaacaagtcattg 307  Q
    |||||| |||   ||||||||||||||||||   |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  9412010 attaagaaag---ctatgatccttaaattta---cggggataacacaggttgagttcttcaagcaaagggaaacattcagcaatgagtaacaagtcattg 9412103  T
Q  308 ctattgatagaatccattttggaacaagtgagtgaggttaaagttgtaatatt 360  Q
    |||||||||||| ||||| | ||  |||||| |||||||||||||||||||||    
T  9412104 ctattgatagaacccattcttgaggaagtgaatgaggttaaagttgtaatatt 9412156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 256 - 306
Target Start/End: Complemental strand, 6596360 - 6596310
Alignment:
Q  256 gttgagttcttcgagcaaagggaaacattcagcaatgagtaacaagtcatt 306  Q
    ||||||||||| |||||| |||||||| |||||||||||||||||||||||    
T  6596360 gttgagttctttgagcaatgggaaacaatcagcaatgagtaacaagtcatt 6596310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 306
Target Start/End: Complemental strand, 10579225 - 10579173
Alignment:
Q  254 aggttgagttcttcgagcaaagggaaacattcagcaatgagtaacaagtcatt 306  Q
    ||||||||||||| |||||| |||||||| || |||| |||||||||||||||    
T  10579225 aggttgagttctttgagcaatgggaaacaatcggcaacgagtaacaagtcatt 10579173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 299
Target Start/End: Original strand, 6436837 - 6436882
Alignment:
Q  254 aggttgagttcttcgagcaaagggaaacattcagcaatgagtaaca 299  Q
    |||||||||| || ||||||||||||||| || |||||||||||||    
T  6436837 aggttgagttgtttgagcaaagggaaacaatcggcaatgagtaaca 6436882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 299
Target Start/End: Complemental strand, 7993676 - 7993631
Alignment:
Q  254 aggttgagttcttcgagcaaagggaaacattcagcaatgagtaaca 299  Q
    ||||||||||||| ||||||||||||||| |  |||||||||||||    
T  7993676 aggttgagttctttgagcaaagggaaacaattggcaatgagtaaca 7993631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 62
Target Start/End: Complemental strand, 6588657 - 6588601
Alignment:
Q  6 ataaagacctcaatgttggtctctcatggagagctgaaaaaatgcctgctttggtta 62  Q
    |||||||| ||||| ||||||||||| ||||||| |||  ||||||||| |||||||    
T  6588657 ataaagacgtcaattttggtctctcacggagagcagaagcaatgcctgcattggtta 6588601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 6 - 360
Target Start/End: Complemental strand, 8186734 - 8186383
Alignment:
Q  6 ataaagacctcaatgttggtctctcatggagagctgaaaaaatgcctgctttggttatgccatcacactcaaacatgataacctcttggagaagcttgca 105  Q
    ||||||||||||| |||||||||||    || || |||  |||||||||||||||||    |  ||||| ||||||||||||||||| |||| |||| ||    
T  8186734 ataaagacctcaacgttggtctctcccatagggcagaagcaatgcctgctttggttaactgagaacacttaaacatgataacctcttcgagatgcttaca 8186635  T
Q  106 gttcttaaacaagtgaacaagtgatatgtcgttgatgtagtaatgttcagagagattaatcctggtgagtttggaaagtgccaatgaaagagtctccaac 205  Q
     ||||| |||||||||| |||  || |||||||||| |||| ||| | ||| ||||||| | ||   |||||| |||||||||||||||||| ||| |      
T  8186634 attctttaacaagtgaaaaagcaatttgtcgttgatatagttatgattagatagattaaccttgcgaagtttgaaaagtgccaatgaaagagcctcaact 8186535  T
Q  206 ccattaaggaagttactatgatccttaaatttattacggggataacccaggttgagttcttcgagcaaagggaaacattcagcaatgagtaacaagtcat 305  Q
    |||| || |||| ||||  |||  || || |  |||   || | ||  || | ||||||||| || ||||| ||||| || || ||||| || | ||||     
T  8186534 ccatcaaagaagatactgagattgttgaactcttta---gggttactgagatcgagttcttctaggaaaggaaaacaatcggcgatgaggaagatgtcag 8186438  T
Q  306 tgctattgatagaatccattttggaacaagtgagtgaggttaaagttgtaatatt 360  Q
    ||||||||||||| || || |||||||| ||||||||||| ||||||||||||||    
T  8186437 tgctattgatagattcaatgttggaacatgtgagtgaggtcaaagttgtaatatt 8186383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 94 - 197
Target Start/End: Original strand, 1481523 - 1481626
Alignment:
Q  94 gagaagcttgcagttcttaaacaagtgaacaagtgatatgtcgttgatgtagtaatgttcagagagattaatcctggtgagtttggaaagtgccaatgaa 193  Q
    ||||| |||||||||||| ||||| |||| |||  | |||||||||| ||||||||| ||||||||||||| | ||  ||||||| | ||||||||||||    
T  1481523 gagaaacttgcagttcttgaacaattgaaaaagcaaaatgtcgttgacgtagtaatgatcagagagattaagcttgcggagtttgaagagtgccaatgaa 1481622  T
Q  194 agag 197  Q
    ||||    
T  1481623 agag 1481626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 254 - 357
Target Start/End: Original strand, 1755479 - 1755582
Alignment:
Q  254 aggttgagttcttcgagcaaagggaaacattcagcaatgagtaacaagtcattgctattgatagaatccattttggaacaagtgagtgaggttaaagttg 353  Q
    |||||||||||||| |||||||||||||| ||||||||||| || ||||||||| ||| || |  | | || |||||||| ||||| ||||| |||||||    
T  1755479 aggttgagttcttcaagcaaagggaaacagtcagcaatgaggaagaagtcattggtatggagatgagcgatgttggaacatgtgagagaggtcaaagttg 1755578  T
Q  354 taat 357  Q
    ||||    
T  1755579 taat 1755582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 6 - 120
Target Start/End: Complemental strand, 21833682 - 21833568
Alignment:
Q  6 ataaagacctcaatgttggtctctcatggagagctgaaaaaatgcctgctttggttatgccatcacactcaaacatgataacctcttggagaagcttgca 105  Q
    ||||||| |||||||||||||||||| |||||||||||  ||||||| || || ||||   |||||| ||||||||||| |||||||  |||||||| ||    
T  21833682 ataaagaactcaatgttggtctctcacggagagctgaagcaatgccttctctgcttatttgatcacaatcaaacatgatgacctcttcaagaagcttaca 21833583  T
Q  106 gttcttaaacaagtg 120  Q
     ||||| | ||||||    
T  21833582 attctttagcaagtg 21833568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 254 - 360
Target Start/End: Original strand, 571256 - 571362
Alignment:
Q  254 aggttgagttcttcgagcaaagggaaacattcagcaatgagtaacaagtcattgctattgatagaatccattttggaacaagtgagtgaggttaaagttg 353  Q
    |||| |||||||||||||||||||||||| || |  ||||| ||||||||  || || ||||||||||| | | ||||||| |||| || || |||||||    
T  571256 aggtggagttcttcgagcaaagggaaacagtccgagatgagcaacaagtcggtggtactgatagaatccttgtaggaacaattgagagatgtcaaagttg 571355  T
Q  354 taatatt 360  Q
    |||||||    
T  571356 taatatt 571362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 254 - 360
Target Start/End: Complemental strand, 7225290 - 7225185
Alignment:
Q  254 aggttgagttcttcgagcaaagggaaacattcagcaatgagtaacaagtcattgctattgatagaatccattttggaacaagtgagtgaggttaaagttg 353  Q
    |||| |||||||||||||||||||||||| || || ||||| |||| |||| ||||| ||| |||||  | | ||||||| ||||| ||||| |||||||    
T  7225290 aggtcgagttcttcgagcaaagggaaacaatccgcgatgaggaacatgtcagtgctagtgacagaat-aaatgtggaacatgtgagagaggtcaaagttg 7225192  T
Q  354 taatatt 360  Q
    |||||||    
T  7225191 taatatt 7225185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 119
Target Start/End: Original strand, 1601184 - 1601300
Alignment:
Q  6 ataaagacctcaatgttggtctctcatggagagctga---aaaaatgcctgctttggttatgccatcacactcaaacatgataacctcttggagaagctt 102  Q
    |||||||||||||||||||||||||| ||||||| ||   || |||| | || | |||||| |||| ||| || | |||||| |||||||  ||| ||||    
T  1601184 ataaagacctcaatgttggtctctcacggagagcagaagcaacaatgtcagcatcggttattccataacagtcgagcatgatgacctcttcaagatgctt 1601283  T
Q  103 gcagttcttaaacaagt 119  Q
    | |||||||||||||||    
T  1601284 gaagttcttaaacaagt 1601300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 357
Target Start/End: Complemental strand, 21833402 - 21833304
Alignment:
Q  259 gagttcttcgagcaaagggaaacattcagcaatgagtaacaagtcattgctattgatagaatccattttggaacaagtgagtgaggttaaagttgtaat 357  Q
    |||||||||| |||| |||||||||||  | ||||| |||| |||| || |||||| |  | | ||||||||||||||||| ||||| ||||| |||||    
T  21833402 gagttcttcgtgcaaggggaaacattcgacgatgaggaacaggtcagtggtattgaaattagcaattttggaacaagtgagagaggtcaaagtagtaat 21833304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 293
Target Start/End: Complemental strand, 2373598 - 2373565
Alignment:
Q  260 agttcttcgagcaaagggaaacattcagcaatga 293  Q
    ||||||||||||||||||||||| ||||||||||    
T  2373598 agttcttcgagcaaagggaaacaatcagcaatga 2373565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 368
Target Start/End: Original strand, 641939 - 642047
Alignment:
Q  260 agttcttcgagcaaagggaaacattcagcaatgagtaacaagtcattgctattgatagaatccattttggaacaagtgagtgaggttaaagttgtaatat 359  Q
    ||||||||||| ||||||||||| |  ||||| || ||||||||  || | || || |||| ||||||||||||  |||| || |||||||||| ||| |    
T  641939 agttcttcgagtaaagggaaacaattggcaataaggaacaagtcggtgttttttatggaattcattttggaacatttgagagaagttaaagttgaaatct 642038  T
Q  360 tcttggaga 368  Q
    ||| |||||    
T  642039 tctgggaga 642047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 290
Target Start/End: Complemental strand, 2621538 - 2621502
Alignment:
Q  254 aggttgagttcttcgagcaaagggaaacattcagcaa 290  Q
    ||||||||||||||||| ||||||||||| |||||||    
T  2621538 aggttgagttcttcgagtaaagggaaacaatcagcaa 2621502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 15 - 120
Target Start/End: Complemental strand, 514044 - 513939
Alignment:
Q  15 tcaatgttggtctctcatggagagctgaaaaaatgcctgctttggttatgccatcacactcaaacatgataacctcttggagaagcttgcagttcttaaa 114  Q
    ||||||||||||||||| ||||||| |||  ||| |||  ||||||||||| ||| || | ||| |||||||||||||| |||||||| ||||| || ||    
T  514044 tcaatgttggtctctcacggagagcagaagcaataccttgtttggttatgcgatcgcaattaaagatgataacctcttgaagaagcttacagtttttgaa 513945  T
Q  115 caagtg 120  Q
    ||||||    
T  513944 caagtg 513939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 108
Target Start/End: Complemental strand, 51763774 - 51763672
Alignment:
Q  6 ataaagacctcaatgttggtctctcatggagagctgaaaaaatgcctgctttggttatgccatcacactcaaacatgataacctcttggagaagcttgca 105  Q
    |||||||| ||||||||||||| ||| ||||||| |||   |  ||||| ||||||||   |||||| ||||||||||| || |||||||||||||| ||    
T  51763774 ataaagacgtcaatgttggtctttcacggagagcagaagtgactcctgcattggttatttgatcacagtcaaacatgatgacatcttggagaagcttaca 51763675  T
Q  106 gtt 108  Q
    |||    
T  51763674 gtt 51763672  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 357
Target Start/End: Original strand, 1657474 - 1657556
Alignment:
Q  275 gggaaacattcagcaatgagtaacaagtcattgctattgatagaatccattttggaacaagtgagtgaggttaaagttgtaat 357  Q
    |||||||| ||||||||||| |||| |||| ||| ||||||||| || ||   |||||| ||||| |||||||||||| ||||    
T  1657474 gggaaacaatcagcaatgaggaacaggtcagtgcgattgatagattcaatgaaggaacacgtgagagaggttaaagttttaat 1657556  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 296
Target Start/End: Complemental strand, 51763529 - 51763487
Alignment:
Q  254 aggttgagttcttcgagcaaagggaaacattcagcaatgagta 296  Q
    |||| ||||||||||||||| ||||||||||| ||||||||||    
T  51763529 aggtcgagttcttcgagcaatgggaaacattccgcaatgagta 51763487  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 357
Target Start/End: Original strand, 32151900 - 32151997
Alignment:
Q  260 agttcttcgagcaaagggaaacattcagcaatgagtaacaagtcattgctattgatagaatccattttggaacaagtgagtgaggttaaagttgtaat 357  Q
    ||||||||||||||||||||||| || |||||||| ||||||||  ||| ||||| |||||  ||    ||||||||||| ||||| |||||||||||    
T  32151900 agttcttcgagcaaagggaaacaatcggcaatgaggaacaagtcggtgccattgaaagaataaatacgagaacaagtgagagaggtcaaagttgtaat 32151997  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 164
Target Start/End: Complemental strand, 18315012 - 18314854
Alignment:
Q  6 ataaagacctcaatgttggtctctcatggagagctgaaaaaatgcctgctttggttatgccatcacactcaaacatgataacctcttggagaagcttgca 105  Q
    ||||||||||||| |||||||||||| |||||||  ||  ||| || || ||||||||   || ||| | ||| |||||   ||||| ||||||||| ||    
T  18315012 ataaagacctcaaagttggtctctcacggagagcaaaagcaatacccgcgttggttatttgatgacagtaaaatatgattgtctcttcgagaagcttaca 18314913  T
Q  106 gttcttaaacaagtgaacaagtgatatgtcgttgatgtagtaatgttcagagagattaa 164  Q
    |||||| |||||||| | ||| |||   ||||||||||||||||| |||| || |||||    
T  18314912 gttcttgaacaagtggaaaagcgattgatcgttgatgtagtaatgatcagcgaaattaa 18314854  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 294
Target Start/End: Complemental strand, 18314768 - 18314728
Alignment:
Q  254 aggttgagttcttcgagcaaagggaaacattcagcaatgag 294  Q
    |||| |||||||||||||||||||||||| |||||||||||    
T  18314768 aggtcgagttcttcgagcaaagggaaacaatcagcaatgag 18314728  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 363
Target Start/End: Original strand, 44246337 - 44246374
Alignment:
Q  326 ttggaacaagtgagtgaggttaaagttgtaatattctt 363  Q
    |||||||||||||| ||||||||||| |||||||||||    
T  44246337 ttggaacaagtgagagaggttaaagtagtaatattctt 44246374  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 328 - 368
Target Start/End: Complemental strand, 17642991 - 17642951
Alignment:
Q  328 ggaacaagtgagtgaggttaaagttgtaatattcttggaga 368  Q
    |||||||||||| ||||| |||||||||||||||| |||||    
T  17642991 ggaacaagtgagagaggtcaaagttgtaatattctgggaga 17642951  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 83 - 194
Target Start/End: Complemental strand, 28673571 - 28673460
Alignment:
Q  83 ataacctcttggagaagcttgcagttcttaaacaagtgaacaagtgatatgtcgttgatgtagtaatgttcagagagattaatcctggtgagtttggaaa 182  Q
    |||||||||| ||||||||| ||||| || | ||| || | |||||||  |||||||||||||| ||| | ||||||||||| | ||  ||||||| |||    
T  28673571 ataacctcttcgagaagcttacagttgtttatcaaatggaaaagtgattggtcgttgatgtagtgatgatgagagagattaaccttgcagagtttgaaaa 28673472  T
Q  183 gtgccaatgaaa 194  Q
    ||| ||||||||    
T  28673471 gtggcaatgaaa 28673460  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 306 - 363
Target Start/End: Original strand, 32268513 - 32268570
Alignment:
Q  306 tgctattgatagaatccattttggaacaagtgagtgaggttaaagttgtaatattctt 363  Q
    ||||||||||| | | |||||||||||||||||| ||||| ||||||||||| |||||    
T  32268513 tgctattgatatattgcattttggaacaagtgagagaggtcaaagttgtaatcttctt 32268570  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 305
Target Start/End: Original strand, 17205662 - 17205710
Alignment:
Q  257 ttgagttcttcgagcaaagggaaacattcagcaatgagtaacaagtcat 305  Q
    |||||||||| ||||||||||||||| || ||||||||||||| |||||    
T  17205662 ttgagttctttgagcaaagggaaacaatcggcaatgagtaacaggtcat 17205710  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 83 - 194
Target Start/End: Complemental strand, 28695821 - 28695710
Alignment:
Q  83 ataacctcttggagaagcttgcagttcttaaacaagtgaacaagtgatatgtcgttgatgtagtaatgttcagagagattaatcctggtgagtttggaaa 182  Q
    |||||||||| ||||||||||||||| || | |||||| | ||||| |  | |||||||||||| |||   ||||||||||| | ||  ||||||| |||    
T  28695821 ataacctcttcgagaagcttgcagttgtttatcaagtggaaaagtggttggccgttgatgtagtgatgacgagagagattaaccttgcagagtttgaaaa 28695722  T
Q  183 gtgccaatgaaa 194  Q
    ||| ||||||||    
T  28695721 gtggcaatgaaa 28695710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 366
Target Start/End: Complemental strand, 41900572 - 41900512
Alignment:
Q  306 tgctattgatagaatccattttggaacaagtgagtgaggttaaagttgtaatattcttgga 366  Q
    ||||||||||| ||| ||||| | |||||||||| ||||| ||||||||||| || |||||    
T  41900572 tgctattgatataatgcatttcgtaacaagtgagagaggtcaaagttgtaatctttttgga 41900512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 360
Target Start/End: Original strand, 7977799 - 7977905
Alignment:
Q  254 aggttgagttcttcgagcaaagggaaacattcagcaatgagtaacaagtcattgctattgatagaatccattttggaacaagtgagtgaggttaaagttg 353  Q
    |||| ||||||||| |||||||||||||| || || ||||| |||| ||  ||| |||| ||||| || || || |||||  |||||||||| |||||||    
T  7977799 aggtcgagttcttcaagcaaagggaaacaatctgctatgagaaacatgtggttgatattaatagattcaatgttagaacatttgagtgaggtcaaagttg 7977898  T
Q  354 taatatt 360  Q
     ||||||    
T  7977899 caatatt 7977905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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