View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324A_low_73 (Length: 372)
Name: NF11324A_low_73
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_73 |
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Alignment Details
Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 27 - 360
Target Start/End: Complemental strand, 16087805 - 16087476
Alignment:
| Q |
27 |
ttgtgttgattttaaaatttctaccgttcaaattgtgatcttggttttttaaactattattttgagcaaaatgtgtttgagacaagttaacatgaaatta |
126 |
Q |
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| T |
16087805 |
ttgtgttgattttaaa-tttctaccat-caaattgtgatcttggttttt--aactattattttgagcaaaatgtgtttgagacaagttaacgtgaaatta |
16087710 |
T |
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| Q |
127 |
acaaatagaaatattttattagatgtggattacttactatgtcatcttttgataaactttaattagtgaaatattattttaaacttggttctcatgaata |
226 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16087709 |
acaaatagaaatattttattagatgtggattacttactatgtcatcttttgataaactttaattagtgaaatattattttaaacttggttctcatgaata |
16087610 |
T |
|
| Q |
227 |
tatgatatttatagtgggagaattcctttttaacaattttgtgtgtgtataaatgagaactatgatagcatcttagaagttagaatactttaaacttaat |
326 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16087609 |
tatgatatttatagtgggagaattcctttttaacaattttgtgtgtgtataaatgagaactatgatagcatcttagaagttagaatactttaaacttaat |
16087510 |
T |
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| Q |
327 |
catcatgagctgaagtagtgattcatgtaatatt |
360 |
Q |
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| T |
16087509 |
catcatgagctgaagtagtgattcatgtaatatt |
16087476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 111; Significance: 6e-56; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 75 - 289
Target Start/End: Complemental strand, 38643247 - 38643027
Alignment:
| Q |
75 |
ttaaactattattttgagcaaaatgtgtttgagacaagttaacatgaaattaacaaatagaaatattttattagatgtggattacttactatgtcatctt |
174 |
Q |
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| T |
38643247 |
ttaaactattactttgagcaaaatacgtttgaaacaaattatagtgaaataaacagattgaaatattttattagatgtggaatacttactatgtcat-tt |
38643149 |
T |
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| Q |
175 |
ttgataaactttaatt-agtgaaatattattttaaacttggttctcatgaatatatgatatttatagtgggagaattcctttttaacaattt------tg |
267 |
Q |
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|||||||| ||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||| || |
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| T |
38643148 |
ttgataaagtttaatttagtgaaatattattttagtcttggttctcatgaatatgtgatatttatagtaggagaattcctttttaacatttttttttgtg |
38643049 |
T |
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| Q |
268 |
tgtgtgtataaatgagaactat |
289 |
Q |
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|||||||||||||||||||||| |
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| T |
38643048 |
tgtgtgtataaatgagaactat |
38643027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 195 - 288
Target Start/End: Original strand, 19974422 - 19974514
Alignment:
| Q |
195 |
aaatattattttaaacttggttctcatgaatatatgatatttatagtgggagaattcctttttaacaattttgtgtgtgtataaatgagaacta |
288 |
Q |
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|||||||| |||||| ||||| ||||||| ||| || |||||| ||||||||||||| |||||||| ||||| ||||||||| |||||| |||| |
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| T |
19974422 |
aaatattaatttaaatttggtgctcatgagtatgtggtatttacagtgggagaattcttttttaacgatttt-tgtgtgtatgaatgaggacta |
19974514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 285 - 329
Target Start/End: Complemental strand, 53838144 - 53838100
Alignment:
| Q |
285 |
actatgatagcatcttagaagttagaatactttaaacttaatcat |
329 |
Q |
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| T |
53838144 |
actatgatagcatcttagaagttagaataccttaagcttaatcat |
53838100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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